* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01584.21
|
1.0
|
2
|
3086.0
|
same-strand
|
CheW-like domain
|
2
|
PF09078.13
|
1.0
|
2
|
3086.0
|
same-strand
|
CheY binding
|
3
|
PF01627.25
|
1.0
|
2
|
3086.0
|
same-strand
|
Hpt domain
|
4
|
PF02518.28
|
1.0
|
2
|
3086.0
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
5
|
PF02895.16
|
1.0
|
2
|
3086.0
|
same-strand
|
Signal transducing histidine kinase, homodimeric domain
|
6
|
PF13677.8
|
1.0
|
2
|
2152.0
|
same-strand
|
Membrane MotB of proton-channel complex MotA/MotB
|
7
|
PF00691.22
|
1.0
|
2
|
2152.0
|
same-strand
|
OmpA family
|
8
|
PF01618.18
|
1.0
|
2
|
1268.0
|
same-strand
|
MotA/TolQ/ExbB proton channel family
|
9
|
PF05280.13
|
1.0
|
2
|
563.5
|
same-strand
|
Flagellar transcriptional activator (FlhC)
|
10
|
PF05247.15
|
1.0
|
2
|
221.0
|
same-strand
|
Flagellar transcriptional activator (FlhD)
|
11
|
PF00582.28
|
1.0
|
2
|
429.5
|
opposite-strand
|
Universal stress protein family
|
12
|
PF00982.23
|
1.0
|
2
|
875.5
|
same-strand
|
Glycosyltransferase family 20
|
13
|
PF02358.18
|
1.0
|
2
|
2271.5
|
same-strand
|
Trehalose-phosphatase
|
++ More..