Result : EXP02123
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02123 |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Left | 4407945 |
| Right | 4408019 |
| Strand | + |
| Nucleotide Sequence | GTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTTTTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAA |
| Sequence | VAIGACMQESAFLAFPSHSMLSKR |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | Venturini et al 2020 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 24 |
++ More..
| Conservation Analysis |
No. of Species: 75
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 160608 | 160682 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 2 | 2153056 | 2153130 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 838941 | 839015 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 4 | 3943561 | 3943635 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 5 | 832436 | 832510 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 6 | 2767306 | 2767380 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 7 | 4386627 | 4386701 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 8 | 4301590 | 4301664 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 9 | 4922139 | 4922213 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 10 | 4241633 | 4241707 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 11 | 2966966 | 2967040 | + | NZ_CP033744.1 | Citrobacter freundii |
| 12 | 2103997 | 2104071 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 13 | 3135352 | 3135426 | - | NZ_CP038469.1 | Citrobacter tructae |
| 14 | 5252243 | 5252317 | - | NZ_CP054254.1 | Klebsiella variicola |
| 15 | 249618 | 249692 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 16 | 4962729 | 4962803 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 17 | 489361 | 489435 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 18 | 5009138 | 5009212 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 19 | 4171638 | 4171712 | + | NZ_AP014857.1 | Escherichia albertii |
| 20 | 4200186 | 4200260 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 21 | 4219167 | 4219241 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 22 | 3142299 | 3142373 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 23 | 239154 | 239228 | + | NZ_LR134340.1 | Escherichia marmotae |
| 24 | 133457 | 133531 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 25 | 4283087 | 4283161 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 26 | 4402987 | 4403061 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 27 | 5601801 | 5601875 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 28 | 5123788 | 5123862 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 29 | 2884322 | 2884396 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 30 | 253633 | 253707 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 31 | 243055 | 243129 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 32 | 5868080 | 5868154 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 33 | 3465795 | 3465869 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 34 | 2363716 | 2363790 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 238739 | 238813 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 36 | 240803 | 240877 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 37 | 369800 | 369874 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 38 | 3668084 | 3668158 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 39 | 375936 | 376010 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 40 | 360794 | 360868 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 41 | 3790894 | 3790968 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 42 | 3070803 | 3070877 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 43 | 254094 | 254168 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 44 | 3409472 | 3409546 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 45 | 4566623 | 4566697 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 46 | 1416339 | 1416413 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 47 | 1535133 | 1535207 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 48 | 276780 | 276854 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 49 | 3594700 | 3594774 | - | NZ_CP065534.1 | Lonsdalea populi |
| 50 | 3299159 | 3299233 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 51 | 224573 | 224647 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 52 | 2736989 | 2737063 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 53 | 3737985 | 3738059 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 54 | 252602 | 252676 | + | NC_015968.1 | Enterobacter soli |
| 55 | 2496133 | 2496207 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 56 | 273844 | 273918 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 57 | 284202 | 284276 | + | NZ_CP025799.1 | Dickeya zeae |
| 58 | 318231 | 318305 | + | NZ_LT615367.1 | Dickeya aquatica |
| 59 | 5298289 | 5298363 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 60 | 2012402 | 2012476 | + | NZ_CP026047.1 | Raoultella planticola |
| 61 | 5000828 | 5000902 | - | NZ_CP041247.1 | Raoultella electrica |
| 62 | 5810604 | 5810678 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 63 | 3915725 | 3915799 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 64 | 3838504 | 3838578 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 65 | 4401826 | 4401900 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 66 | 2443503 | 2443577 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 67 | 4370108 | 4370182 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 68 | 3672378 | 3672452 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 69 | 266820 | 266894 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 70 | 1348067 | 1348141 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 71 | 4499712 | 4499786 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 72 | 438491 | 438565 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 73 | 531530 | 531604 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 74 | 1432920 | 1432994 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 75 | 183788 | 183850 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 76 | 4497369 | 4497431 | - | NZ_CP006569.1 | Sodalis praecaptivus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_009792.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF07356.14 | 1.0 | 75 | 305.5 | same-strand | Protein of unknown function (DUF1481) |
| 2 | PF00216.23 | 1.0 | 75 | 21.0 | same-strand | Bacterial DNA-binding protein |
| 3 | PF04222.14 | 1.0 | 75 | 92.0 | same-strand | Protein of unknown function (DUF416) |
| 4 | PF04493.16 | 1.0 | 75 | 725.0 | same-strand | Endonuclease V |
| 5 | PF01208.19 | 1.0 | 75 | 1406.0 | same-strand | Uroporphyrinogen decarboxylase (URO-D) |
| 6 | PF00293.30 | 0.99 | 74 | 2512 | same-strand | NUDIX domain |
| 7 | PF09297.13 | 0.99 | 74 | 2512 | same-strand | NADH pyrophosphatase zinc ribbon domain |
| 8 | PF04353.15 | 0.87 | 65 | 3380.0 | opposite-strand | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ |
| 9 | PF01808.20 | 0.65 | 49 | 2376 | opposite-strand | AICARFT/IMPCHase bienzyme |
| 10 | PF02142.24 | 0.65 | 49 | 2376 | opposite-strand | MGS-like domain |
| 11 | PF01071.21 | 0.67 | 50 | 1065.5 | opposite-strand | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain |
| 12 | PF02844.17 | 0.67 | 50 | 1065.5 | opposite-strand | Phosphoribosylglycinamide synthetase, N domain |
| 13 | PF02843.18 | 0.65 | 49 | 1065 | opposite-strand | Phosphoribosylglycinamide synthetase, C domain |
| 14 | PF02655.16 | 0.67 | 50 | 1065.5 | opposite-strand | ATP-grasp domain |
++ More..