Result : EXP02122
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02122 |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Left | 4238752 |
| Right | 4238805 |
| Strand | + |
| Nucleotide Sequence | GTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAA |
| Sequence | VILFCSAINPCTITRYF |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | Venturini et al 2020 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 17 |
++ More..
| Conservation Analysis |
No. of Species: 116
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 41124 | 41177 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 2 | 5040355 | 5040408 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 3 | 3638512 | 3638565 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 4 | 3168596 | 3168649 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 5 | 4784730 | 4784783 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 6 | 2648518 | 2648571 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 7 | 4729915 | 4729968 | - | NC_015968.1 | Enterobacter soli |
| 8 | 4564740 | 4564793 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 9 | 2516695 | 2516748 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 10 | 4538393 | 4538446 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 11 | 408976 | 409029 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 12 | 4623567 | 4623620 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 13 | 6106830 | 6106883 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 14 | 4854263 | 4854316 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 15 | 625658 | 625711 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 16 | 4102460 | 4102513 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 17 | 1048905 | 1048958 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 18 | 4217327 | 4217380 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 19 | 4663273 | 4663326 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 20 | 2910316 | 2910369 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 21 | 4645118 | 4645171 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 22 | 4028723 | 4028776 | + | NZ_AP014857.1 | Escherichia albertii |
| 23 | 4058337 | 4058390 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 24 | 4070912 | 4070965 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 25 | 3002268 | 3002321 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 26 | 2019014 | 2019067 | + | NZ_CP053416.1 | Salmonella bongori |
| 27 | 4277146 | 4277199 | - | NZ_LR134340.1 | Escherichia marmotae |
| 28 | 4391700 | 4391753 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 29 | 6118993 | 6119046 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 30 | 5506212 | 5506265 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 31 | 1790839 | 1790892 | + | NZ_CP026047.1 | Raoultella planticola |
| 32 | 5196944 | 5196997 | - | NZ_CP041247.1 | Raoultella electrica |
| 33 | 2830673 | 2830726 | + | NZ_CP033744.1 | Citrobacter freundii |
| 34 | 2259711 | 2259764 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 35 | 3273886 | 3273939 | - | NZ_CP038469.1 | Citrobacter tructae |
| 36 | 817818 | 817871 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 37 | 4691482 | 4691535 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 38 | 4504763 | 4504816 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 39 | 3418945 | 3418998 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 40 | 5382006 | 5382059 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 41 | 5348243 | 5348296 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 42 | 5002635 | 5002688 | - | NZ_CP023525.1 | Cedecea neteri |
| 43 | 3106753 | 3106806 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 44 | 4610519 | 4610572 | - | NZ_LR134201.1 | Cedecea lapagei |
| 45 | 3918662 | 3918715 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 46 | 45486 | 45539 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 47 | 3690339 | 3690392 | - | NZ_CP028271.1 | Mixta intestinalis |
| 48 | 4486449 | 4486502 | - | NZ_CP026377.1 | Mixta gaviniae |
| 49 | 4180830 | 4180883 | - | NZ_CP061511.1 | Mixta calida |
| 50 | 1676618 | 1676671 | + | NZ_CP019706.1 | Pantoea alhagi |
| 51 | 1045362 | 1045415 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 52 | 3754834 | 3754887 | - | NZ_CP065534.1 | Lonsdalea populi |
| 53 | 38975 | 39028 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 54 | 4588854 | 4588907 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 55 | 4490457 | 4490510 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 56 | 51316 | 51369 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 57 | 4394144 | 4394197 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 58 | 4087608 | 4087661 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 59 | 4311024 | 4311077 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 60 | 4235622 | 4235675 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 61 | 4074673 | 4074726 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 62 | 3459330 | 3459383 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 63 | 36729 | 36782 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 64 | 3188781 | 3188834 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 65 | 4614893 | 4614946 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 66 | 1669168 | 1669221 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 67 | 4072476 | 4072529 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 68 | 108183 | 108236 | + | NZ_CP038853.1 | Pantoea vagans |
| 69 | 5461125 | 5461178 | - | NZ_CP054254.1 | Klebsiella variicola |
| 70 | 36914 | 36967 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 71 | 5172082 | 5172135 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 72 | 4801218 | 4801271 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 73 | 2898392 | 2898445 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 74 | 2058280 | 2058333 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 75 | 4639709 | 4639762 | - | NZ_CP025799.1 | Dickeya zeae |
| 76 | 32591 | 32644 | + | NZ_LT615367.1 | Dickeya aquatica |
| 77 | 63369 | 63422 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 78 | 5027435 | 5027488 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 79 | 1708549 | 1708602 | - | NZ_CP011254.1 | Serratia fonticola |
| 80 | 5372705 | 5372758 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 81 | 5135876 | 5135929 | - | NZ_LT906479.1 | Serratia ficaria |
| 82 | 32780 | 32833 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 83 | 4690776 | 4690829 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 84 | 1771895 | 1771948 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 85 | 4180028 | 4180081 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 86 | 3799107 | 3799160 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 87 | 4914507 | 4914560 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 88 | 4903546 | 4903599 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 89 | 36988 | 37041 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 90 | 4804103 | 4804156 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 91 | 4744844 | 4744897 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 92 | 1532658 | 1532711 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 93 | 4701543 | 4701596 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 94 | 4166989 | 4167042 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 95 | 117181 | 117234 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 96 | 2938320 | 2938373 | + | NZ_CP049115.1 | Pantoea stewartii |
| 97 | 3582632 | 3582685 | - | NZ_CP067057.1 | Rahnella aceris |
| 98 | 163173 | 163226 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 99 | 177078 | 177131 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 100 | 2579056 | 2579109 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 101 | 5305697 | 5305750 | - | NZ_LR134494.1 | Serratia quinivorans |
| 102 | 5231759 | 5231812 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 103 | 5186786 | 5186839 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 104 | 4395182 | 4395235 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 105 | 6534 | 6587 | + | NZ_CP071320.1 | Serratia ureilytica |
| 106 | 1434023 | 1434076 | - | NZ_CP065640.1 | Serratia rubidaea |
| 107 | 4660736 | 4660789 | - | NZ_CP046293.1 | Yersinia intermedia |
| 108 | 1658082 | 1658135 | + | NZ_CP007230.1 | Yersinia similis |
| 109 | 41114 | 41167 | + | NZ_CP032487.1 | Yersinia hibernica |
| 110 | 4541707 | 4541760 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 111 | 2647634 | 2647687 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 112 | 1698310 | 1698363 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 113 | 3741379 | 3741432 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 114 | 2214793 | 2214846 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 115 | 3739820 | 3739873 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 116 | 1671596 | 1671649 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 117 | 1001054 | 1001107 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP051548.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 0.86 | 100 | 4673.5 | same-strand | Radical SAM superfamily |
| 2 | PF06969.18 | 0.85 | 99 | 4674 | same-strand | HemN C-terminal domain |
| 3 | PF00158.28 | 1.0 | 116 | 2976 | opposite-strand | Sigma-54 interaction domain |
| 4 | PF00072.26 | 1.0 | 116 | 2976 | opposite-strand | Response regulator receiver domain |
| 5 | PF14532.8 | 1.0 | 116 | 2976 | opposite-strand | Sigma-54 interaction domain |
| 6 | PF02954.21 | 1.0 | 116 | 2976 | opposite-strand | Bacterial regulatory protein, Fis family |
| 7 | PF07728.16 | 1.0 | 116 | 2976 | opposite-strand | AAA domain (dynein-related subfamily) |
| 8 | PF02518.28 | 1.0 | 116 | 1918 | opposite-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 9 | PF00512.27 | 1.0 | 116 | 1918 | opposite-strand | His Kinase A (phospho-acceptor) domain |
| 10 | PF00120.26 | 1.0 | 116 | 307 | opposite-strand | Glutamine synthetase, catalytic domain |
| 11 | PF03951.21 | 1.0 | 116 | 307 | opposite-strand | Glutamine synthetase, beta-Grasp domain |
| 12 | PF00009.29 | 1.0 | 116 | 17 | same-strand | Elongation factor Tu GTP binding domain |
| 13 | PF00679.26 | 1.0 | 116 | 17 | same-strand | Elongation factor G C-terminus |
| 14 | PF03144.27 | 1.0 | 116 | 17 | same-strand | Elongation factor Tu domain 2 |
| 15 | PF01926.25 | 1.0 | 116 | 17 | same-strand | 50S ribosome-binding GTPase |
| 16 | PF02580.18 | 0.65 | 75 | 3456 | same-strand | D-Tyr-tRNA(Tyr) deacylase |
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