* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02599.18
|
1.0
|
4
|
5468.5
|
opposite-strand
|
Global regulator protein family
|
2
|
PF01411.21
|
1.0
|
4
|
2603.5
|
opposite-strand
|
tRNA synthetases class II (A)
|
3
|
PF02272.21
|
1.0
|
4
|
2603.5
|
opposite-strand
|
DHHA1 domain
|
4
|
PF07973.16
|
1.0
|
4
|
2603.5
|
opposite-strand
|
Threonyl and Alanyl tRNA synthetase second additional domain
|
5
|
PF02631.18
|
1.0
|
4
|
1902.5
|
opposite-strand
|
RecX family
|
6
|
PF00154.23
|
1.0
|
4
|
759.5
|
opposite-strand
|
recA bacterial DNA recombination protein
|
7
|
PF08423.13
|
1.0
|
4
|
759.5
|
opposite-strand
|
Rad51
|
8
|
PF06745.15
|
1.0
|
4
|
759.5
|
opposite-strand
|
KaiC
|
9
|
PF02464.19
|
1.0
|
4
|
182.5
|
opposite-strand
|
Competence-damaged protein
|
10
|
PF13406.8
|
1.0
|
4
|
39.0
|
opposite-strand
|
Transglycosylase SLT domain
|
++ More..