* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04393.15
|
1.0
|
2
|
1302.5
|
same-strand
|
Protein of unknown function (DUF535)
|
2
|
PF03824.18
|
1.0
|
2
|
41.0
|
opposite-strand
|
High-affinity nickel-transport protein
|
3
|
PF08521.12
|
1.0
|
2
|
1187.0
|
opposite-strand
|
Two-component sensor kinase N-terminal
|
4
|
PF02518.28
|
1.0
|
2
|
1187.0
|
opposite-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
5
|
PF00672.27
|
1.0
|
2
|
1187.0
|
opposite-strand
|
HAMP domain
|
6
|
PF00512.27
|
1.0
|
2
|
1187.0
|
opposite-strand
|
His Kinase A (phospho-acceptor) domain
|
7
|
PF00072.26
|
1.0
|
2
|
2590.5
|
opposite-strand
|
Response regulator receiver domain
|
8
|
PF00486.30
|
1.0
|
2
|
2590.5
|
opposite-strand
|
Transcriptional regulatory protein, C terminal
|
9
|
PF07331.13
|
1.0
|
2
|
4411.5
|
same-strand
|
Tripartite tricarboxylate transporter TctB family
|
++ More..