Protein Information |
Information Type | Description |
---|---|
Protein name | EXP02108 |
NCBI Accession ID | NC_016810.1 |
Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
Left | 2770784 |
Right | 2770954 |
Strand | + |
Nucleotide Sequence | ATGCATAACCAAAAGACATGCGCTTACCACCTGTGTGGAAAGACGATTGAGCAAGGCAAAGAAGTAAAAAACGAGCTGACGCTGATTCGCGGCGCGCAGCTGACACATGAAGAGCGCGATTACTGCTCTGTACGTTGTGCCTCATACGACCAGATGGCGCACGAAAGTTAA |
Sequence | MHNQKTCAYHLCGKTIEQGKEVKNELTLIRGAQLTHEERDYCSVRCASYDQMAHES |
Source of smORF | Transcriptional-level |
Function | |
Pubmed ID | Venturini et al 2020 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 56 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2679974 | 2680138 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
2 | 5008838 | 5008996 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
3 | 2770343 | 2770501 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
4 | 1104592 | 1104750 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
5 | 4291026 | 4291184 | + | NZ_CP053416.1 | Salmonella bongori |
6 | 1567946 | 1568110 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
7 | 2518726 | 2518890 | + | NZ_AP022508.1 | Enterobacter bugandensis |
8 | 1830061 | 1830219 | - | NZ_CP045205.1 | Citrobacter telavivensis |
9 | 3578494 | 3578652 | + | NZ_CP045205.1 | Citrobacter telavivensis |
10 | 2607609 | 2607773 | + | NZ_CP009756.1 | Enterobacter cloacae |
11 | 4764001 | 4764165 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
12 | 1790232 | 1790390 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
13 | 2456896 | 2457054 | - | NZ_CP050508.1 | Raoultella terrigena |
14 | 2755343 | 2755501 | - | NZ_CP060111.1 | Klebsiella michiganensis |
15 | 2881444 | 2881599 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF15943.7 | 0.62 | 8 | 2238.5 | opposite-strand | Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT |
2 | PF01381.24 | 0.77 | 10 | 1536 | same-strand | Helix-turn-helix |
3 | PF06630.13 | 0.69 | 9 | 499 | same-strand | Enterobacterial exodeoxyribonuclease VIII |
4 | PF03837.16 | 1.0 | 13 | 3288 | same-strand | RecT family |
5 | PF13269.8 | 0.92 | 12 | 4521.5 | same-strand | Protein of unknown function (DUF4060) |