Protein Information |
Information Type | Description |
---|---|
Protein name | EXP02102 |
NCBI Accession ID | NC_016810.1 |
Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
Left | 1913776 |
Right | 1914051 |
Strand | + |
Nucleotide Sequence | ATGCCATTTTCAATCAAAAACATATGTTCAGGTCCAAAAGGACATTGCCCAGAAATCTCCAGCCCTATACAGGACAAGCCAGTACCGAGGAATTGCACACTGACCTCAACAACATGCGATATACAGAGCTATACAGTATTCAGCAGATGGTCCTGCAGTTATGAAATGCGCCCACCCGGTGCAGAAGAAAGAACCCCACGACTAAAATTCTCAGCAACGGAGCTCTCATGGCTATCTAAAACAATAGAAACAGAGAGGCGCAACACAAAAGAATGA |
Sequence | MPFSIKNICSGPKGHCPEISSPIQDKPVPRNCTLTSTTCDIQSYTVFSRWSCSYEMRPPGAEERTPRLKFSATELSWLSKTIETERRNTKE |
Source of smORF | Transcriptional-level |
Function | |
Pubmed ID | Venturini et al 2020 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 91 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1956205 | 1956480 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
2 | 1587952 | 1588227 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
3 | 1809994 | 1810272 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
4 | 4325977 | 4326255 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
5 | 4399982 | 4400260 | + | NZ_AP014857.1 | Escherichia albertii |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF06416.14 | 0.75 | 3 | 2742.0 | both-strands | Effector protein NleG |
2 | PF03278.15 | 0.75 | 3 | 2046.0 | both-strands | IpaB/EvcA family |