Result : EXP02102
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02102 |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Left | 1913776 |
| Right | 1914051 |
| Strand | + |
| Nucleotide Sequence | ATGCCATTTTCAATCAAAAACATATGTTCAGGTCCAAAAGGACATTGCCCAGAAATCTCCAGCCCTATACAGGACAAGCCAGTACCGAGGAATTGCACACTGACCTCAACAACATGCGATATACAGAGCTATACAGTATTCAGCAGATGGTCCTGCAGTTATGAAATGCGCCCACCCGGTGCAGAAGAAAGAACCCCACGACTAAAATTCTCAGCAACGGAGCTCTCATGGCTATCTAAAACAATAGAAACAGAGAGGCGCAACACAAAAGAATGA |
| Sequence | MPFSIKNICSGPKGHCPEISSPIQDKPVPRNCTLTSTTCDIQSYTVFSRWSCSYEMRPPGAEERTPRLKFSATELSWLSKTIETERRNTKE |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | Venturini et al 2020 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 91 |
++ More..
| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1956205 | 1956480 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 1587952 | 1588227 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 1809994 | 1810272 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 4325977 | 4326255 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 5 | 4399982 | 4400260 | + | NZ_AP014857.1 | Escherichia albertii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06416.14 | 0.75 | 3 | 2742.0 | both-strands | Effector protein NleG |
| 2 | PF03278.15 | 0.75 | 3 | 2046.0 | both-strands | IpaB/EvcA family |
++ More..