* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03328.16
|
1.0
|
2
|
4249.0
|
same-strand
|
HpcH/HpaI aldolase/citrate lyase family
|
2
|
PF07690.18
|
1.0
|
2
|
2787.5
|
same-strand
|
Major Facilitator Superfamily
|
3
|
PF12833.9
|
1.0
|
2
|
1881.5
|
same-strand
|
Helix-turn-helix domain
|
4
|
PF07883.13
|
1.0
|
2
|
1881.5
|
same-strand
|
Cupin domain
|
5
|
PF00165.25
|
1.0
|
2
|
1881.5
|
same-strand
|
Bacterial regulatory helix-turn-helix proteins, AraC family
|
6
|
PF12706.9
|
1.0
|
2
|
929.5
|
same-strand
|
Beta-lactamase superfamily domain
|
7
|
PF13591.8
|
1.0
|
2
|
426.0
|
opposite-strand
|
MerR HTH family regulatory protein
|
8
|
PF01556.20
|
1.0
|
2
|
731.0
|
opposite-strand
|
DnaJ C terminal domain
|
9
|
PF00226.33
|
1.0
|
2
|
731.0
|
opposite-strand
|
DnaJ domain
|
10
|
PF11412.10
|
1.0
|
2
|
2296.5
|
same-strand
|
Disulphide bond corrector protein DsbC
|
11
|
PF13899.8
|
1.0
|
2
|
2296.5
|
same-strand
|
Thioredoxin-like
|
12
|
PF02683.17
|
1.0
|
2
|
2296.5
|
same-strand
|
Cytochrome C biogenesis protein transmembrane region
|
13
|
PF01323.22
|
1.0
|
2
|
4179.5
|
same-strand
|
DSBA-like thioredoxin domain
|
14
|
PF13462.8
|
1.0
|
2
|
4179.5
|
same-strand
|
Thioredoxin
|
15
|
PF13098.8
|
1.0
|
2
|
4179.5
|
same-strand
|
Thioredoxin-like domain
|
++ More..