Result : B3PF20
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CP000934.1 |
| Organism | Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa) |
| Left | 3992776 |
| Right | 3993024 |
| Strand | + |
| Nucleotide Sequence | ATGCCCCCAAAAAAGAAACCTATCGATTTCGAACAGTCCCTCAATGCCCTGGAGGCACTGGTTAACCGCATGGAGCAGGGTGACATGCCCCTGGAAGAGTCGCTGCAAGCCTTTGAGTCCGGGATTGCCCTGACGCGCGAGTGCCAGGCCCGCCTGGCCGCTGCGGAACTGCAGGTCACCAAGTTGATTGAAGAACAGGGCAATATCAGCCTGACCGGGTTCGACCAGGATCAGGATGATGCACTATGA |
| Sequence | MPPKKKPIDFEQSLNALEALVNRMEQGDMPLEESLQAFESGIALTRECQARLAAAELQVTKLIEEQGNISLTGFDQDQDDAL |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 18556790 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | B3PF20 |
| ORF Length (Amino Acid) | 82 |
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| Conservation Analysis |
No. of Species: 89
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3992776 | 3993024 | + | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 2 | 2168984 | 2169220 | + | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 3 | 495347 | 495589 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 4 | 420153 | 420392 | - | NZ_CP043869.1 | Neptunomonas concharum |
| 5 | 5125059 | 5125301 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 6 | 4525312 | 4525554 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 7 | 823496 | 823738 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 8 | 5912524 | 5912766 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 9 | 5124117 | 5124359 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 10 | 614837 | 615079 | - | NC_008027.1 | Pseudomonas entomophila L48 |
| 11 | 5715222 | 5715464 | - | NZ_CP009365.1 | Pseudomonas soli |
| 12 | 339837 | 340115 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 13 | 5580375 | 5580617 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 14 | 5944296 | 5944538 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 15 | 5782558 | 5782800 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 16 | 5800891 | 5801133 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 17 | 4683818 | 4684060 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 18 | 680625 | 680867 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 19 | 643296 | 643538 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 20 | 1031231 | 1031482 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 21 | 4962886 | 4963128 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 22 | 6154361 | 6154603 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 23 | 3010443 | 3010703 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 24 | 366246 | 366485 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 25 | 5726483 | 5726725 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 26 | 2852927 | 2853169 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 27 | 745273 | 745515 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 28 | 6074716 | 6074958 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 29 | 865300 | 865542 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 30 | 6227651 | 6227896 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 31 | 5426259 | 5426501 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 32 | 4523369 | 4523611 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 33 | 2820877 | 2821119 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 34 | 5952110 | 5952352 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 35 | 5997848 | 5998090 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 36 | 5265890 | 5266132 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 37 | 497545 | 497787 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 38 | 6085563 | 6085805 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 39 | 6065807 | 6066049 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 40 | 4097506 | 4097742 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 41 | 674319 | 674561 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 42 | 868144 | 868401 | - | NZ_CP047491.1 | Microbulbifer hydrolyticus |
| 43 | 5198268 | 5198510 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 44 | 5377111 | 5377353 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 45 | 5799717 | 5799959 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 46 | 6141145 | 6141387 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 47 | 3598883 | 3599125 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 48 | 719611 | 719856 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 49 | 1092266 | 1092508 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 50 | 706804 | 707043 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 51 | 627239 | 627484 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 52 | 4211173 | 4211415 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 53 | 5272212 | 5272454 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 54 | 916624 | 916866 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 55 | 707804 | 708046 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 56 | 1414908 | 1415150 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 57 | 2650848 | 2651117 | + | NZ_CP041242.1 | Lysobacter alkalisoli |
| 58 | 1049498 | 1049743 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 59 | 800490 | 800732 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 60 | 1282088 | 1282330 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 61 | 753503 | 753748 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 62 | 5096721 | 5096963 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 63 | 5117002 | 5117247 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 64 | 5305116 | 5305352 | + | NZ_CP048878.1 | Spartinivicinus ruber |
| 65 | 1748560 | 1748790 | + | NZ_AP017928.1 | Methylocaldum marinum |
| 66 | 722438 | 722680 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 67 | 861520 | 861750 | - | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 68 | 3379505 | 3379750 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 69 | 2051769 | 2052011 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 70 | 369011 | 369277 | + | NZ_CP042218.1 | Luteimonas granuli |
| 71 | 411229 | 411477 | - | NC_002971.4 | Coxiella burnetii RSA 493 |
| 72 | 745715 | 745972 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 73 | 3588824 | 3589057 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 74 | 1375174 | 1375374 | - | NZ_CP029843.1 | Lysobacter maris |
| 75 | 3424196 | 3424429 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 76 | 2020902 | 2021177 | - | NZ_AP014940.1 | Lysobacter enzymogenes |
| 77 | 191869 | 192105 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 78 | 1442174 | 1442410 | - | NZ_CP016268.1 | Woeseia oceani |
| 79 | 1473353 | 1473595 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 80 | 3707992 | 3708267 | + | NZ_CP011131.1 | Lysobacter gummosus |
| 81 | 1480613 | 1480864 | + | NC_022664.1 | Spiribacter curvatus |
| 82 | 2010158 | 2010406 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 83 | 1322862 | 1323125 | + | NZ_CP029556.1 | Lysobacter oculi |
| 84 | 899791 | 900048 | - | NC_011901.1 | Thioalkalivibrio sulfidiphilus HL-EbGr7 |
| 85 | 106508 | 106726 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 86 | 2252318 | 2252572 | - | NZ_CP015249.1 | Dokdonella koreensis DS-123 |
| 87 | 55424 | 55642 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 88 | 120671 | 120871 | + | NZ_CP065435.1 | Halomonas sp. SS10-MC5 |
| 89 | 2274674 | 2274910 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010995.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00348.19 | 0.98 | 87 | -3 | same-strand | Polyprenyl synthetase |
| 2 | PF13292.8 | 0.76 | 68 | 995.0 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3 | PF02779.26 | 0.8 | 71 | 995.0 | same-strand | Transketolase, pyrimidine binding domain |
| 4 | PF02780.22 | 0.8 | 71 | 995.0 | same-strand | Transketolase, C-terminal domain |
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