* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03275.15
|
1.0
|
2
|
4837.5
|
same-strand
|
UDP-galactopyranose mutase
|
2
|
PF13450.8
|
1.0
|
2
|
4837.5
|
same-strand
|
NAD(P)-binding Rossmann-like domain
|
3
|
PF01744.22
|
1.0
|
2
|
3717.5
|
opposite-strand
|
GLTT repeat (6 copies)
|
4
|
PF08310.13
|
1.0
|
2
|
1907.5
|
opposite-strand
|
LGFP repeat
|
5
|
PF01510.27
|
1.0
|
2
|
1907.5
|
opposite-strand
|
N-acetylmuramoyl-L-alanine amidase
|
6
|
PF00934.22
|
1.0
|
2
|
239.5
|
opposite-strand
|
PE family
|
7
|
PF08282.14
|
1.0
|
2
|
11.0
|
same-strand
|
haloacid dehalogenase-like hydrolase
|
8
|
PF01553.23
|
1.0
|
2
|
1650.0
|
same-strand
|
Acyltransferase
|
++ More..