Result : B3EUK5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L30 |
| NCBI Accession ID | CP001102.1 |
| Organism | Amoebophilus asiaticus (strain 5a2) |
| Left | 201858 |
| Right | 202040 |
| Strand | - |
| Nucleotide Sequence | ATGGCAAAAGTTAGAATTACCCAAGTAAGAAGCACTATTAAATGTCCTATGAGGCAAAAGCTAACTATTAAAGCTTTAAAACTTGGTAGGATCAATAAGAGTGTAGAACTAGAATTTACACCACAAATTCAAGGAATGGTACGACAAGTGCATCACTTAGTTACTACAGAAAATATAGCATAG |
| Sequence | MAKVRITQVRSTIKCPMRQKLTIKALKLGRINKSVELEFTPQIQGMVRQVHHLVTTENIA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7. |
| Pubmed ID | 20023027 |
| Domain | CDD:412218 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B3EUK5 |
| ORF Length (Amino Acid) | 60 |
++ More..
| Conservation Analysis |
No. of Species: 153
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5266516 | 5266695 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 2 | 1907094 | 1907273 | - | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 3 | 250649 | 250828 | - | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 4 | 248192 | 248371 | - | NZ_CP040106.1 | Echinicola rosea |
| 5 | 25685 | 25864 | + | NZ_CP034562.1 | Flammeovirga pectinis |
| 6 | 1980002 | 1980181 | + | NZ_CP009621.1 | Pontibacter korlensis |
| 7 | 1827911 | 1828090 | + | NC_018010.1 | Belliella baltica DSM 15883 |
| 8 | 5278392 | 5278571 | + | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 9 | 2519402 | 2519581 | + | NZ_CP014766.1 | Pontibacter akesuensis |
| 10 | 3742875 | 3743054 | - | NZ_CP032489.1 | Arachidicoccus soli |
| 11 | 5138077 | 5138256 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 12 | 1973650 | 1973835 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 13 | 2028085 | 2028264 | - | NZ_CP030041.1 | Echinicola strongylocentroti |
| 14 | 5873217 | 5873393 | + | NZ_CP048113.1 | Chitinophaga agri |
| 15 | 2629074 | 2629250 | - | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 16 | 453627 | 453806 | - | NZ_CP020104.1 | Spirosoma aerolatum |
| 17 | 2802227 | 2802406 | - | NZ_CP048106.1 | Pontibacter pudoricolor |
| 18 | 5082837 | 5083016 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 19 | 1256344 | 1256523 | + | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 20 | 169095 | 169274 | - | NZ_CP050063.1 | Spirosoma aureum |
| 21 | 3979808 | 3979987 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 22 | 3757457 | 3757636 | - | NZ_CP025096.1 | Spirosoma pollinicola |
| 23 | 3041644 | 3041823 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 24 | 4496738 | 4496917 | + | NZ_CP021235.1 | Pontibacter actiniarum |
| 25 | 6241769 | 6241948 | + | NZ_CP010429.1 | Spirosoma radiotolerans |
| 26 | 4676672 | 4676854 | + | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 27 | 3650619 | 3650798 | + | NZ_CP047897.1 | Nibribacter ruber |
| 28 | 2656666 | 2656845 | + | NZ_CP042434.1 | Arachidicoccus ginsenosidivorans |
| 29 | 1447243 | 1447422 | - | NZ_CP032382.1 | Chryseolinea soli |
| 30 | 6719148 | 6719327 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 31 | 3755396 | 3755575 | - | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 32 | 3550944 | 3551123 | - | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 33 | 3287905 | 3288087 | + | NZ_CP047984.1 | Pontibacter russatus |
| 34 | 4437988 | 4438167 | - | NZ_CP060723.1 | Pedobacter roseus |
| 35 | 2318163 | 2318348 | + | NZ_CP023777.1 | Chitinophaga caeni |
| 36 | 83453 | 83632 | + | NZ_CP053435.1 | Spirosoma taeanense |
| 37 | 1911496 | 1911675 | - | NC_015703.1 | Runella slithyformis DSM 19594 |
| 38 | 1944838 | 1945020 | + | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 39 | 1120037 | 1120216 | - | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 40 | 1352908 | 1353087 | + | NZ_CP049246.1 | Sphingobacterium lactis |
| 41 | 188018 | 188200 | + | NZ_AP017422.1 | Filimonas lacunae |
| 42 | 2441068 | 2441253 | - | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 43 | 3052485 | 3052664 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 44 | 516117 | 516296 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 45 | 280501 | 280680 | + | NZ_CP010777.1 | Rufibacter radiotolerans |
| 46 | 1110812 | 1110991 | + | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 47 | 3600058 | 3600240 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 48 | 3967240 | 3967419 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 49 | 840660 | 840839 | + | NZ_CP030848.1 | Sphingobacterium hotanense |
| 50 | 521744 | 521923 | + | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 51 | 1694177 | 1694356 | - | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 52 | 2880990 | 2881169 | + | NZ_CP012643.1 | Rufibacter tibetensis |
| 53 | 1841510 | 1841695 | - | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 54 | 5536065 | 5536244 | + | NZ_CP014263.1 | Spirosoma montaniterrae |
| 55 | 2487792 | 2487971 | - | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 56 | 1937053 | 1937235 | + | NZ_CP037755.1 | Pseudocnuella soli |
| 57 | 4571843 | 4572022 | - | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 58 | 1379489 | 1379671 | + | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 59 | 243686 | 243865 | - | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 60 | 214866 | 215042 | - | NZ_CP034930.1 | Apibacter raozihei |
| 61 | 864379 | 864558 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 62 | 1203486 | 1203665 | + | NZ_CP015772.1 | Niabella ginsenosidivorans |
| 63 | 5806954 | 5807136 | - | NC_016609.1 | Niastella koreensis GR20-10 |
| 64 | 1794698 | 1794877 | + | NZ_CP020105.1 | Spirosoma rigui |
| 65 | 5052525 | 5052704 | + | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 66 | 873902 | 874078 | - | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 67 | 1028524 | 1028709 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 68 | 3276868 | 3277050 | + | NZ_CP017478.1 | Urechidicola croceus |
| 69 | 124555 | 124737 | - | NZ_CP069450.1 | Butyricimonas virosa |
| 70 | 3500315 | 3500497 | + | NZ_CP032819.1 | Butyricimonas faecalis |
| 71 | 1307539 | 1307718 | + | NC_014230.1 | Croceibacter atlanticus HTCC2559 |
| 72 | 673400 | 673585 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 73 | 3956573 | 3956752 | - | NZ_CP032157.1 | Paraflavitalea soli |
| 74 | 730838 | 731017 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 75 | 2111945 | 2112127 | + | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 76 | 2133958 | 2134137 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 77 | 3074979 | 3075158 | + | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 78 | 6020484 | 6020669 | + | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 79 | 716997 | 717176 | - | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 80 | 3590022 | 3590198 | - | NC_008255.1 | Cytophaga hutchinsonii ATCC 33406 |
| 81 | 1491833 | 1492018 | - | NZ_CP011390.1 | Flavisolibacter tropicus |
| 82 | 481339 | 481518 | + | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 83 | 2527786 | 2527962 | - | NC_014033.1 | Prevotella ruminicola 23 |
| 84 | 1193576 | 1193752 | - | NZ_CP021904.1 | Alkalitalea saponilacus |
| 85 | 772195 | 772374 | - | NZ_CP011071.1 | Muricauda lutaonensis |
| 86 | 236019 | 236207 | - | NC_018178.1 | Melioribacter roseus P3M-2 |
| 87 | 704832 | 705011 | - | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 88 | 2075547 | 2075723 | - | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 89 | 1539557 | 1539733 | - | NZ_AP018042.1 | Labilibaculum antarcticum |
| 90 | 1989587 | 1989769 | + | NZ_CP022387.1 | Capnocytophaga stomatis |
| 91 | 1116809 | 1116991 | - | NZ_CP013355.1 | Lutibacter profundi |
| 92 | 425714 | 425890 | - | NC_015501.1 | Porphyromonas asaccharolytica DSM 20707 |
| 93 | 2986377 | 2986553 | + | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 94 | 267649 | 267825 | + | NZ_CP013195.1 | Prevotella enoeca |
| 95 | 1088496 | 1088678 | + | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 96 | 2849797 | 2849973 | - | NZ_LT608328.1 | Petrimonas mucosa |
| 97 | 862883 | 863065 | - | NZ_CP054494.1 | Flavobacterium columnare |
| 98 | 3227228 | 3227410 | + | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 99 | 1633741 | 1633920 | - | NZ_LR134404.1 | Weeksella virosa |
| 100 | 367303 | 367479 | + | NZ_CP034120.1 | Glaciecola amylolytica |
| 101 | 47724 | 47903 | - | NZ_CP013210.1 | Empedobacter brevis |
| 102 | 3024299 | 3024487 | - | NZ_CP043420.1 | Kushneria phosphatilytica |
| 103 | 1697604 | 1697783 | + | NZ_CP041637.1 | Formosa sediminum |
| 104 | 3696207 | 3696389 | + | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 105 | 3216972 | 3217148 | - | NZ_CP054012.1 | Parabacteroides distasonis |
| 106 | 3098639 | 3098818 | + | NZ_CP015402.2 | Muribaculum intestinale |
| 107 | 2826753 | 2826929 | - | NZ_LR134384.1 | Prevotella oris |
| 108 | 469275 | 469454 | + | NZ_CP040908.1 | Empedobacter falsenii |
| 109 | 974198 | 974350 | + | NC_013501.1 | Rhodothermus marinus DSM 4252 |
| 110 | 2991390 | 2991572 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 111 | 2432714 | 2432893 | + | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 112 | 2251723 | 2251902 | + | NZ_AP018449.1 | Methylomusa anaerophila |
| 113 | 812176 | 812355 | - | NZ_CP022957.1 | Maribacter cobaltidurans |
| 114 | 2684086 | 2684265 | + | NZ_CP058595.1 | Costertonia aggregata |
| 115 | 1084302 | 1084448 | + | NZ_CP018099.1 | Caldithrix abyssi DSM 13497 |
| 116 | 101633 | 101812 | + | NZ_CP053698.1 | Empedobacter stercoris |
| 117 | 2269585 | 2269764 | - | NZ_CP019288.1 | Kordia antarctica |
| 118 | 335282 | 335464 | - | NZ_CP019419.1 | Polaribacter reichenbachii |
| 119 | 2941738 | 2941917 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 120 | 3450797 | 3450979 | + | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 121 | 4068289 | 4068468 | - | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 122 | 903175 | 903354 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 123 | 1995564 | 1995740 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 124 | 788067 | 788249 | - | NZ_CP022378.1 | Capnocytophaga cynodegmi |
| 125 | 669283 | 669465 | + | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 126 | 1599345 | 1599524 | + | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 127 | 678643 | 678822 | + | NZ_CP037922.1 | Hymenobacter radiodurans |
| 128 | 2448202 | 2448348 | - | NC_010803.1 | Chlorobium limicola DSM 245 |
| 129 | 2313146 | 2313322 | - | NC_015164.1 | Phocaeicola salanitronis DSM 18170 |
| 130 | 7656380 | 7656562 | - | NC_014666.1 | Frankia inefficax |
| 131 | 1728720 | 1728902 | - | NZ_CP061813.1 | Polaribacter haliotis |
| 132 | 1303298 | 1303498 | + | NC_011026.1 | Chloroherpeton thalassium ATCC 35110 |
| 133 | 511237 | 511428 | + | NC_017058.1 | Rickettsia australis str. Cutlack |
| 134 | 1364664 | 1364840 | + | NC_014933.1 | Bacteroides helcogenes P 36-108 |
| 135 | 274990 | 275169 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 136 | 626051 | 626227 | + | NC_017583.1 | Spirochaeta thermophila DSM 6578 |
| 137 | 2789681 | 2789836 | - | NC_008639.1 | Chlorobium phaeobacteroides DSM 266 |
| 138 | 3771885 | 3772064 | + | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 139 | 5695114 | 5695299 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 140 | 1380173 | 1380349 | - | NZ_CP027231.1 | Bacteroides zoogleoformans |
| 141 | 1216789 | 1216971 | - | NC_013522.1 | Thermanaerovibrio acidaminovorans DSM 6589 |
| 142 | 1494554 | 1494736 | - | NZ_CP022386.1 | Capnocytophaga gingivalis |
| 143 | 1527968 | 1528144 | - | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 144 | 1410258 | 1410443 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 145 | 1141300 | 1141482 | + | NZ_CP016757.1 | Cloacibacillus porcorum |
| 146 | 2774235 | 2774417 | - | NZ_LT906459.1 | Odoribacter splanchnicus |
| 147 | 2049166 | 2049348 | + | NZ_CP039934.1 | Myroides fluvii |
| 148 | 4176086 | 4176265 | + | NZ_CP014337.1 | Elizabethkingia bruuniana |
| 149 | 2544095 | 2544274 | - | NZ_CP015067.2 | Elizabethkingia anophelis |
| 150 | 1215389 | 1215574 | - | NC_009718.1 | Fervidobacterium nodosum Rt17-B1 |
| 151 | 1508290 | 1508472 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 152 | 2012276 | 2012422 | - | NC_015436.1 | Sphaerochaeta coccoides DSM 17374 |
| 153 | 384666 | 384818 | - | NZ_LS483447.1 | Porphyromonas crevioricanis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048222.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00253.23 | 0.94 | 144 | 1981.0 | same-strand | Ribosomal protein S14p/S29e |
| 2 | PF00410.21 | 1.0 | 153 | 1480 | same-strand | Ribosomal protein S8 |
| 3 | PF00347.25 | 1.0 | 153 | 910 | same-strand | Ribosomal protein L6 |
| 4 | PF00861.24 | 0.97 | 148 | 541.0 | same-strand | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast |
| 5 | PF00333.22 | 0.99 | 152 | 12.0 | same-strand | Ribosomal protein S5, N-terminal domain |
| 6 | PF03719.17 | 0.99 | 152 | 12.0 | same-strand | Ribosomal protein S5, C-terminal domain |
| 7 | PF00828.21 | 0.99 | 151 | 18 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 8 | PF00344.22 | 1.0 | 153 | 482 | same-strand | SecY |
| 9 | PF00557.26 | 0.71 | 109 | 1876 | same-strand | Metallopeptidase family M24 |
| 10 | PF01176.21 | 0.82 | 125 | 2601 | same-strand | Translation initiation factor 1A / IF-1 |
++ More..