Result : B3EUG8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S21 |
| NCBI Accession ID | CP001102.1 |
| Organism | Amoebophilus asiaticus (strain 5a2) |
| Left | 163219 |
| Right | 163413 |
| Strand | + |
| Nucleotide Sequence | ATGATTGTAGTACAGGTTAAAGATAATGAACCCATAGAGAGAGCATTAAAACGCTTTAAGAAAAAAATAGATCGGGTGAAAGTACTTAAAGAAGTTAAGAGCAGAAGATATTATACAAAACCTTCTATTAAACGTAGAGAGGAGAAGCTAAAAGCTATTTATAAGCAACATTTACAGCAACAAGCAAACGGATAA |
| Sequence | MIVVQVKDNEPIERALKRFKKKIDRVKVLKEVKSRRYYTKPSIKRREEKLKAIYKQHLQQQANG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed |
| Pubmed ID | 20023027 |
| Domain | CDD:412427 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B3EUG8 |
| ORF Length (Amino Acid) | 64 |
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| Conservation Analysis |
No. of Species: 87
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4222592 | 4222786 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 2 | 2680376 | 2680570 | + | NZ_CP030041.1 | Echinicola strongylocentroti |
| 3 | 1905471 | 1905665 | - | NZ_CP009621.1 | Pontibacter korlensis |
| 4 | 863004 | 863198 | - | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 5 | 3211530 | 3211724 | - | NZ_CP047984.1 | Pontibacter russatus |
| 6 | 4426113 | 4426307 | - | NZ_CP021235.1 | Pontibacter actiniarum |
| 7 | 3473754 | 3473948 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 8 | 3412643 | 3412837 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 9 | 884966 | 885160 | + | NZ_CP040106.1 | Echinicola rosea |
| 10 | 944194 | 944388 | + | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 11 | 558186 | 558380 | + | NC_018010.1 | Belliella baltica DSM 15883 |
| 12 | 597069 | 597263 | - | NZ_CP037922.1 | Hymenobacter radiodurans |
| 13 | 3566286 | 3566480 | - | NZ_CP047897.1 | Nibribacter ruber |
| 14 | 2448248 | 2448442 | - | NZ_CP014766.1 | Pontibacter akesuensis |
| 15 | 4366034 | 4366231 | + | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 16 | 2871962 | 2872156 | + | NZ_CP048106.1 | Pontibacter pudoricolor |
| 17 | 2436354 | 2436548 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 18 | 2754793 | 2754987 | - | NZ_CP040896.1 | Hymenobacter jejuensis |
| 19 | 1937242 | 1937436 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 20 | 6684485 | 6684679 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 21 | 1454962 | 1455156 | + | NZ_CP013909.1 | Hymenobacter sedentarius |
| 22 | 1057796 | 1057987 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 23 | 198479 | 198673 | - | NZ_CP010777.1 | Rufibacter radiotolerans |
| 24 | 3520323 | 3520517 | + | NZ_CP040812.1 | Antarcticibacterium flavum |
| 25 | 1144452 | 1144646 | + | NZ_CP034549.1 | Nonlabens ponticola |
| 26 | 4133802 | 4134002 | + | NZ_CP007145.1 | Hymenobacter swuensis DY53 |
| 27 | 426934 | 427128 | - | NZ_CP044285.1 | Hymenobacter baengnokdamensis |
| 28 | 2213750 | 2213941 | - | NZ_CP032819.1 | Butyricimonas faecalis |
| 29 | 2844382 | 2844573 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 30 | 1513867 | 1514061 | + | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 31 | 2361781 | 2361972 | - | NZ_LT906459.1 | Odoribacter splanchnicus |
| 32 | 1769533 | 1769727 | - | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 33 | 4993688 | 4993885 | - | NZ_CP010429.1 | Spirosoma radiotolerans |
| 34 | 8183138 | 8183335 | - | NZ_CP025096.1 | Spirosoma pollinicola |
| 35 | 1063659 | 1063850 | + | NZ_CP041345.1 | Tenuifilum thalassicum |
| 36 | 705067 | 705264 | + | NZ_CP020822.1 | Tenacibaculum maritimum |
| 37 | 3070795 | 3070986 | + | NZ_CP021904.1 | Alkalitalea saponilacus |
| 38 | 1168562 | 1168753 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 39 | 2910879 | 2911073 | - | NZ_CP029145.1 | Hymenobacter nivis |
| 40 | 8263047 | 8263244 | - | NZ_CP050063.1 | Spirosoma aureum |
| 41 | 6730294 | 6730491 | - | NZ_CP020104.1 | Spirosoma aerolatum |
| 42 | 1459736 | 1459927 | + | NZ_CP069450.1 | Butyricimonas virosa |
| 43 | 246002 | 246193 | + | NZ_LR027382.1 | Alistipes megaguti |
| 44 | 2675620 | 2675811 | - | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 45 | 3103564 | 3103755 | - | NZ_CP054012.1 | Parabacteroides distasonis |
| 46 | 2234956 | 2235147 | - | NZ_AP019736.1 | Alistipes dispar |
| 47 | 2929430 | 2929627 | + | NZ_CP020105.1 | Spirosoma rigui |
| 48 | 3683884 | 3684075 | - | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 49 | 3066702 | 3066893 | - | NZ_CP049246.1 | Sphingobacterium lactis |
| 50 | 3904047 | 3904241 | - | NC_016940.1 | Saprospira grandis str. Lewin |
| 51 | 2707004 | 2707195 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 52 | 2931439 | 2931630 | + | NZ_LT608328.1 | Petrimonas mucosa |
| 53 | 1355895 | 1356092 | - | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 54 | 3677626 | 3677817 | + | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 55 | 2180574 | 2180765 | + | NZ_AP019735.1 | Alistipes communis |
| 56 | 1545352 | 1545543 | - | NZ_AP023049.1 | Alistipes indistinctus |
| 57 | 458875 | 459069 | - | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 58 | 2697529 | 2697720 | - | NZ_CP030848.1 | Sphingobacterium hotanense |
| 59 | 1235946 | 1236140 | + | NZ_LS483447.1 | Porphyromonas crevioricanis |
| 60 | 141971 | 142162 | - | NZ_CP015402.2 | Muribaculum intestinale |
| 61 | 2610727 | 2610918 | + | NC_017464.1 | Ignavibacterium album JCM 16511 |
| 62 | 3344134 | 3344310 | + | NZ_AP018042.1 | Labilibaculum antarcticum |
| 63 | 512187 | 512378 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 64 | 410223 | 410414 | + | NC_014370.1 | Prevotella melaninogenica ATCC 25845 |
| 65 | 388829 | 389020 | + | NZ_CP023863.1 | Prevotella jejuni |
| 66 | 1354888 | 1355082 | + | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 67 | 2705740 | 2705931 | + | NC_018011.1 | Alistipes finegoldii DSM 17242 |
| 68 | 2055075 | 2055266 | + | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 69 | 1609027 | 1609218 | - | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 70 | 3867691 | 3867882 | - | NZ_CP015401.2 | Bacteroides caecimuris |
| 71 | 699770 | 699961 | - | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 72 | 3430480 | 3430671 | - | NZ_CP012938.1 | Bacteroides ovatus |
| 73 | 4709415 | 4709606 | - | NZ_LN877293.1 | Bacteroides fragilis |
| 74 | 2378218 | 2378412 | + | NZ_CP011071.1 | Muricauda lutaonensis |
| 75 | 103770 | 103961 | - | NZ_CP024727.1 | Prevotella intermedia |
| 76 | 2528323 | 2528520 | - | NZ_CP022957.1 | Maribacter cobaltidurans |
| 77 | 1174233 | 1174424 | - | NZ_CP012074.1 | Prevotella fusca JCM 17724 |
| 78 | 1121818 | 1122009 | - | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 79 | 1124478 | 1124669 | - | NZ_LR699004.1 | Phocaeicola dorei |
| 80 | 2874088 | 2874279 | + | NZ_LR134384.1 | Prevotella oris |
| 81 | 2219030 | 2219221 | - | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 82 | 1864568 | 1864762 | + | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 83 | 3301865 | 3302056 | - | NZ_CP069440.1 | Phocaeicola coprophilus |
| 84 | 807078 | 807275 | + | NZ_AP017422.1 | Filimonas lacunae |
| 85 | 5206614 | 5206811 | + | NZ_CP011390.1 | Flavisolibacter tropicus |
| 86 | 151013 | 151210 | - | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 87 | 616897 | 617094 | - | NZ_CP032489.1 | Arachidicoccus soli |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048222.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00589.24 | 0.85 | 74 | 74.0 | same-strand | Phage integrase family |
| 2 | PF02899.19 | 0.84 | 73 | 74 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 3 | PF13495.8 | 0.85 | 74 | 74.0 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 4 | PF02482.21 | 0.75 | 65 | 981 | same-strand | Sigma 54 modulation protein / S30EA ribosomal protein |
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