* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR130759.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04542.16
|
0.8
|
8
|
2789.0
|
same-strand
|
Sigma-70 region 2
|
2
|
PF08281.14
|
0.8
|
8
|
2789.0
|
same-strand
|
Sigma-70, region 4
|
3
|
PF04545.18
|
0.8
|
8
|
2789.0
|
same-strand
|
Sigma-70, region 4
|
4
|
PF13490.8
|
1.0
|
10
|
2475.5
|
same-strand
|
Putative zinc-finger
|
5
|
PF00364.24
|
1.0
|
10
|
1968.0
|
same-strand
|
Biotin-requiring enzyme
|
6
|
PF12282.10
|
1.0
|
10
|
421.0
|
same-strand
|
Signal transduction histidine kinase
|
7
|
PF07568.14
|
1.0
|
10
|
421.0
|
same-strand
|
Histidine kinase
|
8
|
PF02518.28
|
1.0
|
10
|
421.0
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
9
|
PF07536.16
|
1.0
|
10
|
421.0
|
same-strand
|
HWE histidine kinase
|
10
|
PF08448.12
|
0.8
|
8
|
422.5
|
same-strand
|
PAS fold
|
11
|
PF02467.18
|
1.0
|
10
|
106.5
|
opposite-strand
|
Transcription factor WhiB
|
12
|
PF00781.26
|
1.0
|
10
|
124.0
|
opposite-strand
|
Diacylglycerol kinase catalytic domain
|
13
|
PF13508.9
|
0.8
|
8
|
1597.0
|
opposite-strand
|
Acetyltransferase (GNAT) domain
|
14
|
PF00425.20
|
1.0
|
10
|
2129.5
|
opposite-strand
|
chorismate binding enzyme
|
15
|
PF00300.24
|
0.9
|
9
|
3173
|
opposite-strand
|
Histidine phosphatase superfamily (branch 1)
|
++ More..