* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00934.22
|
1.0
|
2
|
3943.0
|
opposite-strand
|
PE family
|
2
|
PF00005.29
|
1.0
|
2
|
2863.0
|
same-strand
|
ABC transporter
|
3
|
PF12857.9
|
1.0
|
2
|
2863.0
|
same-strand
|
TOBE-like domain
|
4
|
PF08402.12
|
1.0
|
2
|
2863.0
|
same-strand
|
TOBE domain
|
5
|
PF13401.8
|
1.0
|
2
|
2863.0
|
same-strand
|
AAA domain
|
6
|
PF00528.24
|
1.0
|
2
|
1604.0
|
same-strand
|
Binding-protein-dependent transport system inner membrane component
|
7
|
PF13531.8
|
1.0
|
2
|
113.0
|
same-strand
|
Bacterial extracellular solute-binding protein
|
8
|
PF13416.8
|
1.0
|
2
|
113.0
|
same-strand
|
Bacterial extracellular solute-binding protein
|
9
|
PF14032.8
|
1.0
|
2
|
3353.5
|
same-strand
|
PknH-like extracellular domain
|
10
|
PF00009.29
|
1.0
|
2
|
4105.5
|
same-strand
|
Elongation factor Tu GTP binding domain
|
11
|
PF06421.14
|
1.0
|
2
|
4105.5
|
same-strand
|
GTP-binding protein LepA C-terminus
|
12
|
PF00679.26
|
1.0
|
2
|
4105.5
|
same-strand
|
Elongation factor G C-terminus
|
13
|
PF03144.27
|
1.0
|
2
|
4105.5
|
same-strand
|
Elongation factor Tu domain 2
|
14
|
PF01926.25
|
1.0
|
2
|
4105.5
|
same-strand
|
50S ribosome-binding GTPase
|
++ More..