Result : EXP02021
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP02021 |
| NCBI Accession ID | NC_000962.3 |
| Organism | Mycobacterium tuberculosis H37Rv |
| Left | 2584922 |
| Right | 2584966 |
| Strand | - |
| Nucleotide Sequence | GTGTCGTTTCGGGCGGGTAAGGCTCGATTCGAGGGCGCCGGCTGA |
| Sequence | VSFRAGKARFEGAG |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 26536359 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 14 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2642029 | 2642073 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 2 | 2584922 | 2584966 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12728.9 | 1.0 | 2 | 1142.5 | opposite-strand | Helix-turn-helix domain |
| 2 | PF19289.1 | 1.0 | 2 | 1636.0 | same-strand | PmbA/TldA metallopeptidase C-terminal domain |
| 3 | PF00528.24 | 1.0 | 2 | 4301.5 | opposite-strand | Binding-protein-dependent transport system inner membrane component |
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