* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF08338.13
|
1.0
|
2
|
2882.0
|
opposite-strand
|
Domain of unknown function (DUF1731)
|
2
|
PF01370.23
|
1.0
|
2
|
2882.0
|
opposite-strand
|
NAD dependent epimerase/dehydratase family
|
3
|
PF04055.23
|
1.0
|
2
|
1205.0
|
opposite-strand
|
Radical SAM superfamily
|
4
|
PF13829.8
|
1.0
|
2
|
426.0
|
opposite-strand
|
Domain of unknown function (DUF4191)
|
5
|
PF00120.26
|
1.0
|
2
|
2530.5
|
both-strands
|
Glutamine synthetase, catalytic domain
|
6
|
PF03951.21
|
1.0
|
2
|
2530.5
|
both-strands
|
Glutamine synthetase, beta-Grasp domain
|
7
|
PF03710.17
|
1.0
|
2
|
1891.0
|
same-strand
|
Glutamate-ammonia ligase adenylyltransferase
|
8
|
PF08335.13
|
1.0
|
2
|
1891.0
|
same-strand
|
GlnD PII-uridylyltransferase
|
9
|
PF00561.22
|
1.0
|
2
|
7171.0
|
same-strand
|
alpha/beta hydrolase fold
|
10
|
PF08386.12
|
1.0
|
2
|
7983
|
same-strand
|
TAP-like protein
|
++ More..