* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01381.24
|
0.67
|
2
|
4500.5
|
same-strand
|
Helix-turn-helix
|
2
|
PF13560.8
|
0.67
|
2
|
4500.5
|
same-strand
|
Helix-turn-helix domain
|
3
|
PF12844.9
|
0.67
|
2
|
4500.5
|
same-strand
|
Helix-turn-helix domain
|
4
|
PF05973.16
|
0.67
|
2
|
3979.5
|
same-strand
|
Phage derived protein Gp49-like (DUF891)
|
5
|
PF01545.23
|
0.67
|
2
|
36.0
|
same-strand
|
Cation efflux family
|
6
|
PF16916.7
|
0.67
|
2
|
36.0
|
same-strand
|
Dimerisation domain of Zinc Transporter
|
7
|
PF00582.28
|
0.67
|
2
|
1391.0
|
same-strand
|
Universal stress protein family
|
8
|
PF13185.8
|
0.67
|
2
|
962.0
|
same-strand
|
GAF domain
|
9
|
PF01590.28
|
0.67
|
2
|
962.0
|
same-strand
|
GAF domain
|
10
|
PF13492.8
|
0.67
|
2
|
962.0
|
same-strand
|
GAF domain
|
11
|
PF07730.15
|
0.67
|
2
|
962.0
|
same-strand
|
Histidine kinase
|
12
|
PF00294.26
|
0.67
|
2
|
3580.0
|
same-strand
|
pfkB family carbohydrate kinase
|
13
|
PF05139.16
|
0.67
|
2
|
4616.0
|
same-strand
|
Erythromycin esterase
|
14
|
PF00156.29
|
0.67
|
2
|
4616.0
|
same-strand
|
Phosphoribosyl transferase domain
|
++ More..