* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00501.30
|
0.8
|
4
|
4410.5
|
same-strand
|
AMP-binding enzyme
|
2
|
PF13193.8
|
0.8
|
4
|
4410.5
|
same-strand
|
AMP-binding enzyme C-terminal domain
|
3
|
PF01553.23
|
0.6
|
3
|
4197
|
same-strand
|
Acyltransferase
|
4
|
PF00934.22
|
0.6
|
3
|
984
|
opposite-strand
|
PE family
|
5
|
PF12077.10
|
1.0
|
5
|
-125
|
opposite-strand
|
Transmembrane protein of unknown function (DUF3556)
|
6
|
PF03734.16
|
0.6
|
3
|
2353
|
opposite-strand
|
L,D-transpeptidase catalytic domain
|
7
|
PF02800.22
|
0.8
|
4
|
3919.0
|
opposite-strand
|
Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
|
8
|
PF00044.26
|
0.8
|
4
|
3919.0
|
opposite-strand
|
Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
|
9
|
PF00162.21
|
0.6
|
3
|
4634
|
opposite-strand
|
Phosphoglycerate kinase
|
++ More..