Result : EXP01989
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01989 |
| NCBI Accession ID | NC_000962.3 |
| Organism | Mycobacterium tuberculosis H37Rv |
| Left | 1507421 |
| Right | 1507534 |
| Strand | + |
| Nucleotide Sequence | ATGGCACTGGGCGCCTGCGACACGTTGTTTGCCGCACAACGCGACGCGTTGGCGCTGCCGTATCCGGGTGTGCTGCCGCAGGGACCGCCACCGCCGAAGGCGTTTGGCACCTGA |
| Sequence | MALGACDTLFAAQRDALALPYPGVLPQGPPPPKAFGT |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 26536359 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 37 |
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| Conservation Analysis |
No. of Species: 75
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1532120 | 1532233 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 2 | 1507421 | 1507534 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 3 | 4048796 | 4048909 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 4 | 2967045 | 2967158 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 5 | 23062 | 23175 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 6 | 6127707 | 6127820 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 7 | 4359077 | 4359190 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 8 | 3546037 | 3546150 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 9 | 3876294 | 3876407 | - | NZ_AP018164.1 | Mycobacterium shigaense |
| 10 | 619255 | 619386 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 11 | 1381550 | 1381663 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 12 | 1060635 | 1060748 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 13 | 5250983 | 5251096 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 14 | 1339009 | 1339122 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 15 | 4240433 | 4240546 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 16 | 5517855 | 5517968 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 17 | 4969818 | 4969931 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 18 | 4004037 | 4004159 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 19 | 4139683 | 4139790 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 20 | 394172 | 394294 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
| 21 | 2349460 | 2349582 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 22 | 2527606 | 2527719 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 23 | 2642138 | 2642251 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 24 | 2989576 | 2989698 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 25 | 655442 | 655564 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 26 | 1437176 | 1437301 | + | NC_015576.1 | Mycolicibacter sinensis |
| 27 | 568307 | 568432 | - | NZ_AP022562.1 | Mycobacterium novum |
| 28 | 3141940 | 3142062 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 29 | 3200458 | 3200580 | + | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 30 | 4424333 | 4424455 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 31 | 1426914 | 1427027 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 32 | 1672109 | 1672222 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 33 | 1346077 | 1346199 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 34 | 3813215 | 3813337 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 35 | 873181 | 873303 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 36 | 2801009 | 2801122 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 37 | 1814547 | 1814669 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 38 | 1402827 | 1402940 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 39 | 5002657 | 5002779 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 40 | 5325479 | 5325601 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 41 | 57863 | 57985 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 42 | 3320553 | 3320678 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 43 | 3130832 | 3130942 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 44 | 389677 | 389769 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 45 | 2271368 | 2271478 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 46 | 1417886 | 1417978 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 47 | 3893329 | 3893439 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 48 | 4214325 | 4214450 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 49 | 2551831 | 2551941 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 50 | 4594410 | 4594520 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 51 | 4289299 | 4289409 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 52 | 1362985 | 1363092 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 53 | 4600752 | 4600862 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 54 | 463238 | 463348 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 55 | 2359737 | 2359829 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 56 | 1122832 | 1122954 | + | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 57 | 1478886 | 1478990 | + | NZ_CP014955.1 | Mycobacteroides abscessus |
| 58 | 5625652 | 5625762 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 59 | 1608352 | 1608471 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 60 | 1335354 | 1335458 | + | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 61 | 1347796 | 1347903 | + | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 62 | 2738189 | 2738323 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 63 | 4266228 | 4266338 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 64 | 5376207 | 5376317 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 65 | 2827245 | 2827355 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 66 | 5472030 | 5472122 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 67 | 5200983 | 5201075 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 68 | 2748725 | 2748835 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 69 | 1333547 | 1333672 | + | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 70 | 1232635 | 1232745 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 71 | 8503792 | 8503905 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 72 | 1298243 | 1298356 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 73 | 7286631 | 7286744 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 74 | 1661564 | 1661677 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 75 | 1117031 | 1117141 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01694.24 | 0.93 | 70 | 2371.5 | same-strand | Rhomboid family |
| 2 | PF01177.24 | 0.84 | 63 | 1556 | same-strand | Asp/Glu/Hydantoin racemase |
| 3 | PF12706.9 | 0.97 | 73 | 712 | same-strand | Beta-lactamase superfamily domain |
| 4 | PF01725.18 | 1.0 | 75 | 14 | same-strand | Ham1 family |
| 5 | PF12823.9 | 0.89 | 67 | 1711 | opposite-strand | Domain of unknown function (DUF3817) |
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