* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01040.20
|
1.0
|
2
|
3826.0
|
opposite-strand
|
UbiA prenyltransferase family
|
2
|
PF01569.23
|
1.0
|
2
|
3286.0
|
opposite-strand
|
PAP2 superfamily
|
3
|
PF19320.1
|
1.0
|
2
|
1380.0
|
opposite-strand
|
Galactofuranosyltransferase-2, domain 3
|
4
|
PF17994.3
|
1.0
|
2
|
1380.0
|
opposite-strand
|
Galactofuranosyltransferase 2 N-terminal
|
5
|
PF13641.8
|
1.0
|
2
|
1380.0
|
opposite-strand
|
Glycosyltransferase like family 2
|
6
|
PF03275.15
|
1.0
|
2
|
184.0
|
opposite-strand
|
UDP-galactopyranose mutase
|
7
|
PF13450.8
|
1.0
|
2
|
184.0
|
opposite-strand
|
NAD(P)-binding Rossmann-like domain
|
8
|
PF01744.22
|
1.0
|
2
|
11.0
|
same-strand
|
GLTT repeat (6 copies)
|
9
|
PF08310.13
|
1.0
|
2
|
1015.5
|
same-strand
|
LGFP repeat
|
10
|
PF01510.27
|
1.0
|
2
|
1015.5
|
same-strand
|
N-acetylmuramoyl-L-alanine amidase
|
11
|
PF00934.22
|
1.0
|
2
|
2830.5
|
same-strand
|
PE family
|
12
|
PF08282.14
|
1.0
|
2
|
4633.0
|
opposite-strand
|
haloacid dehalogenase-like hydrolase
|
++ More..