* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04542.16
|
1.0
|
2
|
2777.0
|
opposite-strand
|
Sigma-70 region 2
|
2
|
PF08281.14
|
1.0
|
2
|
2777.0
|
opposite-strand
|
Sigma-70, region 4
|
3
|
PF12680.9
|
1.0
|
2
|
2777.0
|
opposite-strand
|
SnoaL-like domain
|
4
|
PF04545.18
|
1.0
|
2
|
2777.0
|
opposite-strand
|
Sigma-70, region 4
|
5
|
PF00202.23
|
1.0
|
2
|
1410.0
|
same-strand
|
Aminotransferase class-III
|
6
|
PF00768.22
|
1.0
|
2
|
124.0
|
same-strand
|
D-alanyl-D-alanine carboxypeptidase
|
7
|
PF00083.26
|
1.0
|
2
|
-104.0
|
same-strand
|
Sugar (and other) transporter
|
8
|
PF07690.18
|
1.0
|
2
|
-104.0
|
same-strand
|
Major Facilitator Superfamily
|
9
|
PF01979.22
|
1.0
|
2
|
1373.0
|
same-strand
|
Amidohydrolase family
|
10
|
PF05305.16
|
1.0
|
2
|
2715.0
|
opposite-strand
|
Protein of unknown function (DUF732)
|
11
|
PF09278.13
|
1.0
|
2
|
4035.0
|
same-strand
|
MerR, DNA binding
|
12
|
PF13411.8
|
1.0
|
2
|
4035.0
|
same-strand
|
MerR HTH family regulatory protein
|
13
|
PF00376.25
|
1.0
|
2
|
4035.0
|
same-strand
|
MerR family regulatory protein
|
14
|
PF03631.17
|
1.0
|
2
|
4509.0
|
opposite-strand
|
Virulence factor BrkB
|
++ More..