Result : EXP01958
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01958 |
| NCBI Accession ID | NC_000962.3 |
| Organism | Mycobacterium tuberculosis H37Rv |
| Left | 3353098 |
| Right | 3353196 |
| Strand | + |
| Nucleotide Sequence | GTGCCCTCGCGCACCACCACGAAGTCGATGCCGGGATTGCCGGACAGCGGGCTGGCCACCCCCGGATACAGCCGGGCCGGACGCAGGTTGATGTGGTGA |
| Sequence | VPSRTTTKSMPGLPDSGLATPGYSRAGRRLMW |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 26536359 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 32 |
++ More..
| Conservation Analysis |
No. of Species: 177
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3412930 | 3413028 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 2 | 3353098 | 3353196 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 3 | 1394300 | 1394413 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 4 | 1508512 | 1508610 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 5 | 746660 | 746758 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 6 | 3250815 | 3250913 | + | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 7 | 3311867 | 3311965 | + | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 8 | 3046002 | 3046100 | + | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 9 | 3118860 | 3118973 | + | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 10 | 1843790 | 1843885 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 11 | 2188814 | 2188912 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 12 | 5572633 | 5572731 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 13 | 1584378 | 1584476 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 14 | 8818046 | 8818144 | - | NZ_CP022088.2 | Nocardia brasiliensis |
| 15 | 4517298 | 4517393 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 16 | 2551763 | 2551858 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 17 | 2677033 | 2677131 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 18 | 3658954 | 3659049 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 19 | 4890805 | 4890900 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 20 | 2518456 | 2518554 | - | NZ_CP027114.1 | Gordonia alkanivorans |
| 21 | 2265291 | 2265389 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 22 | 3208132 | 3208227 | + | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 23 | 2530184 | 2530279 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 24 | 3407626 | 3407724 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 25 | 1988835 | 1988930 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 26 | 5917490 | 5917585 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 27 | 3207737 | 3207835 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 28 | 5774715 | 5774813 | + | NZ_LR134352.1 | Nocardia asteroides |
| 29 | 1139308 | 1139403 | - | NZ_CP035504.1 | Kocuria indica |
| 30 | 4997788 | 4997901 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 31 | 1711197 | 1711292 | + | NZ_CP065253.1 | Streptomyces clavuligerus |
| 32 | 398548 | 398646 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 33 | 5476266 | 5476361 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 34 | 2644713 | 2644808 | + | NZ_CP032698.1 | Streptomyces hundungensis |
| 35 | 2017413 | 2017508 | + | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 36 | 1046877 | 1046972 | - | NZ_LR134479.1 | Rothia aeria |
| 37 | 4411223 | 4411318 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 38 | 982905 | 983003 | + | NZ_CP032788.1 | Corynebacterium xerosis |
| 39 | 3031867 | 3031965 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 40 | 2478060 | 2478155 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 41 | 4733860 | 4733955 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 42 | 1201153 | 1201248 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 43 | 3815847 | 3815951 | - | NZ_CP036433.1 | Lignipirellula cremea |
| 44 | 2459746 | 2459847 | - | NZ_AP023355.1 | Actinocatenispora thailandica |
| 45 | 5248257 | 5248352 | - | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 46 | 1764051 | 1764155 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 47 | 220045 | 220140 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 48 | 5949674 | 5949769 | - | NZ_CP033972.1 | Gordonia insulae |
| 49 | 2075794 | 2075889 | + | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 50 | 2050511 | 2050606 | + | NZ_CP034279.1 | Streptomyces ficellus |
| 51 | 4580014 | 4580109 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 52 | 2632273 | 2632380 | + | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 53 | 2765022 | 2765117 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 54 | 2824809 | 2824904 | + | NZ_CP023688.1 | Streptomyces rimosus |
| 55 | 1504004 | 1504102 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 56 | 1612274 | 1612369 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 57 | 1486913 | 1487026 | - | NZ_CP036289.1 | Bremerella volcania |
| 58 | 2463669 | 2463764 | + | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 59 | 3641521 | 3641628 | + | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 60 | 4930058 | 4930153 | - | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 61 | 4677364 | 4677474 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 62 | 4666544 | 4666639 | - | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 63 | 1499872 | 1499967 | + | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 64 | 1412272 | 1412370 | - | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 65 | 5870653 | 5870748 | - | NZ_CP020700.1 | Streptomyces tsukubensis |
| 66 | 4913059 | 4913154 | - | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 67 | 4726817 | 4726912 | - | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 68 | 3861541 | 3861648 | + | NZ_CP009896.1 | Pimelobacter simplex |
| 69 | 7556383 | 7556478 | - | NZ_CP065050.1 | Streptomyces solisilvae |
| 70 | 1143239 | 1143334 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 71 | 1862629 | 1862733 | - | NZ_CP058907.1 | Rhodopseudomonas palustris |
| 72 | 6651754 | 6651849 | - | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 73 | 79052 | 79147 | - | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 74 | 1939898 | 1939993 | + | NZ_CP028913.1 | Agromyces badenianii |
| 75 | 1381933 | 1382031 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 76 | 1419237 | 1419341 | - | NZ_CP009793.1 | Burkholderia dolosa AU0158 |
| 77 | 2260649 | 2260744 | + | NZ_CP060404.1 | Streptomyces buecherae |
| 78 | 7707606 | 7707710 | + | NC_017093.1 | Actinoplanes missouriensis 431 |
| 79 | 2440201 | 2440296 | + | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 80 | 5841587 | 5841676 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 81 | 5752318 | 5752422 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 82 | 504811 | 504918 | - | NZ_CP041091.1 | Nocardioides sambongensis |
| 83 | 5787927 | 5788022 | - | NZ_CP031194.1 | Streptomyces paludis |
| 84 | 1873427 | 1873522 | - | NZ_CP013979.1 | Agromyces aureus |
| 85 | 2131578 | 2131673 | + | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 86 | 1788076 | 1788180 | + | NZ_CP024942.1 | Paraburkholderia terricola |
| 87 | 1663200 | 1663301 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 88 | 3333683 | 3333778 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 89 | 1120789 | 1120887 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 90 | 2684997 | 2685092 | + | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 91 | 5631080 | 5631175 | - | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 92 | 1047357 | 1047455 | - | NZ_CP061538.1 | Rothia amarae |
| 93 | 986547 | 986642 | - | NZ_CP056080.1 | Rothia nasimurium |
| 94 | 1260184 | 1260282 | - | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 95 | 4210575 | 4210670 | - | NZ_CP030033.1 | Cryobacterium soli |
| 96 | 1643255 | 1643350 | - | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 97 | 5539371 | 5539472 | + | NZ_LS398110.1 | Bradyrhizobium vignae |
| 98 | 1059501 | 1059596 | - | NZ_CP061539.1 | Rothia terrae |
| 99 | 1011840 | 1011935 | - | NZ_CP051884.1 | Cellulomonas taurus |
| 100 | 2534379 | 2534474 | + | NZ_CP016282.1 | Cryobacterium arcticum |
| 101 | 1251138 | 1251239 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 102 | 1131079 | 1131183 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 103 | 3767622 | 3767729 | - | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 104 | 2892276 | 2892377 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 105 | 731217 | 731321 | + | NZ_CP036274.1 | Anatilimnocola aggregata |
| 106 | 5257119 | 5257220 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 107 | 223204 | 223308 | + | NZ_CP024935.1 | Paraburkholderia graminis |
| 108 | 995334 | 995429 | - | NZ_CP012507.1 | Kocuria palustris |
| 109 | 4636466 | 4636561 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 110 | 5240270 | 5240374 | + | NC_017082.1 | Bradyrhizobium cosmicum |
| 111 | 5362448 | 5362549 | + | NC_017082.1 | Bradyrhizobium cosmicum |
| 112 | 1304532 | 1304627 | - | NZ_CP015622.1 | Corynebacterium crudilactis |
| 113 | 1334753 | 1334848 | - | NZ_CP044231.1 | Microbacterium caowuchunii |
| 114 | 2338062 | 2338166 | - | NC_010676.1 | Paraburkholderia phytofirmans PsJN |
| 115 | 285236 | 285331 | - | NZ_CP028130.1 | Rathayibacter iranicus |
| 116 | 547265 | 547369 | + | NZ_CP009556.1 | Burkholderia oklahomensis C6786 |
| 117 | 725723 | 725818 | - | NZ_CP058670.1 | Chryseoglobus indicus |
| 118 | 1313881 | 1313976 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 119 | 468383 | 468487 | + | NZ_CP066076.1 | Paraburkholderia ginsengisoli |
| 120 | 4755225 | 4755329 | + | NZ_CP013481.2 | Pandoraea apista |
| 121 | 1841994 | 1842092 | - | NZ_LS483464.1 | Corynebacterium renale |
| 122 | 2995555 | 2995656 | - | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 123 | 2279813 | 2279911 | + | NZ_CP013745.1 | Arthrobacter alpinus |
| 124 | 6159315 | 6159419 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 125 | 912179 | 912283 | - | NZ_CP013480.3 | Pandoraea norimbergensis |
| 126 | 1679661 | 1679756 | + | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 127 | 1242726 | 1242821 | - | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 128 | 1098746 | 1098841 | - | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 129 | 6862126 | 6862227 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 130 | 2060907 | 2061005 | + | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 131 | 323899 | 323994 | - | NZ_AP017457.1 | Aurantimicrobium minutum |
| 132 | 269025 | 269120 | + | NZ_CP038436.1 | Nocardioides seonyuensis |
| 133 | 762045 | 762140 | + | NZ_LN849456.1 | Devriesea agamarum |
| 134 | 2452979 | 2453086 | - | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 135 | 3193134 | 3193223 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 136 | 3351937 | 3352041 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 137 | 3222446 | 3222541 | + | NZ_CP017146.1 | Marisediminicola antarctica |
| 138 | 2608451 | 2608546 | + | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 139 | 3819037 | 3819141 | + | NZ_CP016171.1 | Bordetella bronchialis |
| 140 | 12023 | 12127 | + | NC_007650.1 | Burkholderia thailandensis E264 |
| 141 | 581877 | 581981 | - | NZ_CP013451.1 | Burkholderia cenocepacia |
| 142 | 1257066 | 1257161 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 143 | 726094 | 726198 | + | NZ_LR134302.1 | Achromobacter spanius |
| 144 | 4066705 | 4066806 | + | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 145 | 2676168 | 2676278 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 146 | 2121295 | 2121390 | + | NZ_CP031422.1 | Microbacterium oxydans |
| 147 | 2959107 | 2959211 | + | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 148 | 1043085 | 1043180 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 149 | 2250625 | 2250720 | - | NZ_CP035491.1 | Agromyces protaetiae |
| 150 | 2287524 | 2287628 | + | NC_015684.1 | Afipia carboxidovorans OM5 |
| 151 | 1563038 | 1563133 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 152 | 627350 | 627439 | + | NZ_CP013119.1 | Alcaligenes faecalis |
| 153 | 2355953 | 2356057 | + | NC_010645.1 | Bordetella avium 197N |
| 154 | 1043733 | 1043813 | - | NZ_LR593887.1 | Tuwongella immobilis |
| 155 | 1591362 | 1591457 | - | NZ_CP031425.1 | Microbacterium foliorum |
| 156 | 1085608 | 1085721 | - | NC_015416.1 | Methanothrix soehngenii GP6 |
| 157 | 702622 | 702726 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 158 | 2402956 | 2403051 | + | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 159 | 2011473 | 2011568 | + | NZ_CP064760.1 | Microbacterium schleiferi |
| 160 | 1690994 | 1691089 | + | NZ_CP038256.1 | Microbacterium sediminis |
| 161 | 3068420 | 3068527 | + | NZ_CP053073.1 | Usitatibacter palustris |
| 162 | 2623647 | 2623751 | - | NZ_CP008782.1 | Burkholderia pseudomallei |
| 163 | 14875 | 14979 | + | NZ_CP009728.1 | Burkholderia mallei |
| 164 | 2958692 | 2958787 | + | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 165 | 3940380 | 3940493 | - | NZ_CP009515.1 | Methanosarcina lacustris Z-7289 |
| 166 | 217452 | 217565 | - | NC_011832.1 | Methanosphaerula palustris E1-9c |
| 167 | 241632 | 241745 | + | NC_003552.1 | Methanosarcina acetivorans C2A |
| 168 | 200160 | 200273 | + | NZ_CP009506.1 | Methanosarcina siciliae T4/M |
| 169 | 3572025 | 3572129 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 170 | 1354325 | 1354429 | + | NC_014962.1 | Isosphaera pallida ATCC 43644 |
| 171 | 1323689 | 1323793 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 172 | 2430786 | 2430899 | + | NZ_CP009501.1 | Methanosarcina thermophila TM-1 |
| 173 | 814610 | 814714 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 174 | 771028 | 771132 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 175 | 8853123 | 8853224 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 176 | 8419571 | 8419666 | - | NC_019892.1 | Singulisphaera acidiphila DSM 18658 |
| 177 | 5616562 | 5616663 | + | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 178 | 1499828 | 1499917 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 179 | 1710967 | 1711080 | - | NC_007955.1 | Methanococcoides burtonii DSM 6242 |
| 180 | 972331 | 972435 | + | NZ_CP030086.1 | Polynucleobacter paneuropaeus |
| 181 | 272451 | 272564 | - | NZ_CP009520.1 | Methanosarcina vacuolata Z-761 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00180.22 | 0.99 | 176 | -98.0 | opposite-strand | Isocitrate/isopropylmalate dehydrogenase |
++ More..