* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF14367.8
|
1.0
|
2
|
4098.5
|
opposite-strand
|
Domain of unknown function (DUF4411)
|
2
|
PF06114.15
|
1.0
|
2
|
2854.5
|
opposite-strand
|
IrrE N-terminal-like domain
|
3
|
PF01381.24
|
1.0
|
2
|
2854.5
|
opposite-strand
|
Helix-turn-helix
|
4
|
PF17964.3
|
1.0
|
2
|
102.0
|
opposite-strand
|
Bacterial Ig domain
|
5
|
PF03734.16
|
1.0
|
2
|
102.0
|
opposite-strand
|
L,D-transpeptidase catalytic domain
|
6
|
PF12277.10
|
1.0
|
2
|
1004.0
|
opposite-strand
|
Protein of unknown function (DUF3618)
|
7
|
PF00578.23
|
1.0
|
2
|
1296.5
|
same-strand
|
AhpC/TSA family
|
8
|
PF08534.12
|
1.0
|
2
|
1296.5
|
same-strand
|
Redoxin
|
9
|
PF01546.30
|
1.0
|
2
|
1741.5
|
opposite-strand
|
Peptidase family M20/M25/M40
|
10
|
PF07687.16
|
1.0
|
2
|
1741.5
|
opposite-strand
|
Peptidase dimerisation domain
|
11
|
PF01648.22
|
1.0
|
2
|
3150.5
|
opposite-strand
|
4'-phosphopantetheinyl transferase superfamily
|
++ More..