* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00578.23
|
1.0
|
2
|
1735.0
|
same-strand
|
AhpC/TSA family
|
2
|
PF08534.12
|
1.0
|
2
|
1735.0
|
same-strand
|
Redoxin
|
3
|
PF02627.22
|
1.0
|
2
|
1176.0
|
same-strand
|
Carboxymuconolactone decarboxylase family
|
4
|
PF00823.21
|
1.0
|
2
|
595.0
|
opposite-strand
|
PPE family
|
5
|
PF00934.22
|
1.0
|
2
|
249.0
|
opposite-strand
|
PE family
|
6
|
PF00924.20
|
1.0
|
2
|
550.0
|
opposite-strand
|
Mechanosensitive ion channel
|
7
|
PF00027.31
|
1.0
|
2
|
550.0
|
opposite-strand
|
Cyclic nucleotide-binding domain
|
8
|
PF00211.22
|
1.0
|
2
|
1992.0
|
opposite-strand
|
Adenylate and Guanylate cyclase catalytic domain
|
9
|
PF00672.27
|
1.0
|
2
|
1992.0
|
opposite-strand
|
HAMP domain
|
10
|
PF00294.26
|
1.0
|
2
|
4665.0
|
same-strand
|
pfkB family carbohydrate kinase
|
11
|
PF04191.15
|
1.0
|
2
|
5793.0
|
same-strand
|
Phospholipid methyltransferase
|
12
|
PF04140.16
|
1.0
|
2
|
5793.0
|
same-strand
|
Isoprenylcysteine carboxyl methyltransferase (ICMT) family
|
++ More..