Result : B3E7T7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L23 |
| NCBI Accession ID | CP001089.1 |
| Organism | Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) |
| Left | 1396640 |
| Right | 1396924 |
| Strand | + |
| Nucleotide Sequence | ATGAACATCTATTCAATTATCAAAAAGCCGCATGTCACCGAGAAAACATCTCTCGGTACTGAGGCTGCAAACACCATCACCCTGGTGGTTGACCGAGATTCAAACAAGATCGAAATCAAGAAAGCTGTTGAGTCGCTCTTCAAGGTCAATGTTACTTCGGTACGTACCGTGAATGTGGCTGGCAAAGTCAAGCGCTTCGGTCGTAACTATGGCAAGCGTCAAAACTGGAAAAAGGCCTATATCACGCTGAAGGAAGGCCAGACCGTCGACTTCTTCGAAGTGTAA |
| Sequence | MNIYSIIKKPHVTEKTSLGTEAANTITLVVDRDSNKIEIKKAVESLFKVNVTSVRTVNVAGKVKRFGRNYGKRQNWKKAYITLKEGQTVDFFEV |
| Source of smORF | Swiss-Prot |
| Function | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. {ECO:0000255|HAMAP-Rule:MF_01369}. |
| Pubmed ID | |
| Domain | CDD:412311 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B3E7T7 |
| ORF Length (Amino Acid) | 94 |
++ More..
| Conservation Analysis |
No. of Species: 338
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1396640 | 1396924 | + | NC_010814.1 | Geobacter lovleyi SZ |
| 2 | 723950 | 724234 | + | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 3 | 3127624 | 3127908 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 4 | 701595 | 701879 | + | NC_007517.1 | Geobacter metallireducens GS-15 |
| 5 | 4014790 | 4015074 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 6 | 1274660 | 1274944 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 7 | 745005 | 745289 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 8 | 1099345 | 1099629 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 9 | 3686539 | 3686823 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 10 | 415160 | 415399 | + | NZ_CP014322.1 | Alteromonas addita |
| 11 | 3731335 | 3731574 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 12 | 1663050 | 1663289 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 13 | 3111022 | 3111276 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 14 | 451438 | 451677 | + | NZ_CP008849.1 | Alteromonas australica |
| 15 | 300430 | 300669 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 16 | 3849007 | 3849246 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 17 | 419010 | 419294 | + | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 18 | 854558 | 854812 | + | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 19 | 2415025 | 2415312 | - | NZ_AP021875.1 | Desulfosarcina widdelii |
| 20 | 287795 | 288070 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 21 | 3234802 | 3235092 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 22 | 617053 | 617331 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 23 | 585293 | 585580 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 24 | 2722066 | 2722341 | - | NZ_CP029347.1 | Saliniradius amylolyticus |
| 25 | 1509108 | 1509410 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 26 | 1970276 | 1970563 | - | NZ_CP016604.1 | Otariodibacter oris |
| 27 | 1085622 | 1085906 | + | NZ_CP028926.1 | Pasteurella multocida |
| 28 | 2011164 | 2011448 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 29 | 1705339 | 1705572 | + | NZ_CP026364.1 | Proteus hauseri |
| 30 | 135980 | 136213 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 31 | 3584049 | 3584282 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 32 | 316318 | 316551 | + | NZ_CP065534.1 | Lonsdalea populi |
| 33 | 925762 | 926034 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 34 | 300609 | 300845 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 35 | 842031 | 842318 | + | NC_009943.1 | Desulfococcus oleovorans Hxd3 |
| 36 | 84866 | 85153 | + | NZ_CP018804.1 | Histophilus somni |
| 37 | 4046262 | 4046495 | - | NZ_LT615367.1 | Dickeya aquatica |
| 38 | 4426852 | 4427085 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 39 | 519481 | 519765 | + | NC_008340.1 | Alkalilimnicola ehrlichii MLHE-1 |
| 40 | 613855 | 614142 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 41 | 2011468 | 2011701 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 42 | 284429 | 284662 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 43 | 3481182 | 3481415 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 44 | 1419679 | 1419912 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 45 | 150036 | 150269 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 46 | 474212 | 474445 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 47 | 4190064 | 4190297 | - | NZ_CP025799.1 | Dickeya zeae |
| 48 | 486367 | 486600 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 49 | 1646675 | 1646908 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 50 | 4389970 | 4390203 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 51 | 4798143 | 4798376 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 52 | 749824 | 750057 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 53 | 157866 | 158141 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 54 | 158737 | 159012 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 55 | 377486 | 377719 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 56 | 714692 | 714925 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 57 | 4179027 | 4179260 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 58 | 452114 | 452398 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 59 | 1195284 | 1195571 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 60 | 2432320 | 2432601 | - | NZ_AP017372.2 | Halorhodospira halochloris |
| 61 | 1179419 | 1179652 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 62 | 2377577 | 2377864 | - | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 63 | 1590744 | 1591031 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 64 | 2039960 | 2040247 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 65 | 1920742 | 1921029 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 66 | 1915444 | 1915731 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 67 | 694797 | 695084 | + | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 68 | 337411 | 337698 | - | NZ_CP046531.1 | Mannheimia ovis |
| 69 | 1118252 | 1118536 | - | NZ_CP065640.1 | Serratia rubidaea |
| 70 | 450138 | 450410 | + | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 71 | 177669 | 177944 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 72 | 180627 | 180902 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 73 | 176432 | 176707 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 74 | 365913 | 366200 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 75 | 337286 | 337570 | + | NZ_CP071320.1 | Serratia ureilytica |
| 76 | 4073316 | 4073600 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 77 | 4809495 | 4809779 | - | NZ_LT906479.1 | Serratia ficaria |
| 78 | 4895966 | 4896250 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 79 | 5011991 | 5012275 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 80 | 2129582 | 2129815 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
| 81 | 2551236 | 2551523 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 82 | 370381 | 370614 | + | NZ_LS483470.1 | Leminorella richardii |
| 83 | 4845218 | 4845502 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 84 | 2490633 | 2490920 | - | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 85 | 4258021 | 4258254 | - | NZ_CP050150.1 | Hafnia alvei |
| 86 | 4099721 | 4099954 | - | NZ_CP048796.1 | Providencia vermicola |
| 87 | 971198 | 971431 | + | NZ_CP029736.1 | Providencia rettgeri |
| 88 | 3567481 | 3567714 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 89 | 1383268 | 1383552 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 90 | 2900198 | 2900482 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 91 | 1655293 | 1655571 | - | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 92 | 4195266 | 4195499 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 93 | 902260 | 902547 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 94 | 245517 | 245792 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 95 | 164397 | 164672 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 96 | 169342 | 169617 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 97 | 3589857 | 3590159 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 98 | 1318054 | 1318338 | - | NZ_CP011254.1 | Serratia fonticola |
| 99 | 2120865 | 2121098 | - | NZ_CP010975.1 | Kangiella geojedonensis |
| 100 | 1188585 | 1188818 | - | NZ_CP019706.1 | Pantoea alhagi |
| 101 | 1157663 | 1157941 | + | NZ_CP016268.1 | Woeseia oceani |
| 102 | 4939937 | 4940170 | - | NZ_LR134494.1 | Serratia quinivorans |
| 103 | 2058945 | 2059232 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 104 | 3333604 | 3333837 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 105 | 4146468 | 4146701 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 106 | 402621 | 402854 | + | NZ_CP061511.1 | Mixta calida |
| 107 | 477238 | 477471 | + | NZ_CP026377.1 | Mixta gaviniae |
| 108 | 4226203 | 4226436 | + | NZ_CP028271.1 | Mixta intestinalis |
| 109 | 2066636 | 2066911 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 110 | 480337 | 480570 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 111 | 1207488 | 1207775 | + | NZ_CP061799.1 | Desulfonema limicola |
| 112 | 165304 | 165591 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 113 | 2099205 | 2099492 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 114 | 373470 | 373703 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 115 | 3435765 | 3435998 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 116 | 3451382 | 3451615 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 117 | 3427389 | 3427622 | - | NZ_AP014857.1 | Escherichia albertii |
| 118 | 4186522 | 4186755 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 119 | 368009 | 368266 | - | NZ_CP040098.1 | Desulfoglaeba alkanexedens ALDC |
| 120 | 4065397 | 4065630 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 121 | 2700084 | 2700371 | - | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 122 | 3315916 | 3316149 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 123 | 2372673 | 2372906 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 124 | 3954571 | 3954804 | - | NZ_LR134340.1 | Escherichia marmotae |
| 125 | 3164164 | 3164397 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 126 | 535751 | 536038 | + | NZ_CP061280.1 | Mannheimia bovis |
| 127 | 3489295 | 3489528 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 128 | 2115398 | 2115682 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 129 | 446803 | 447036 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 130 | 124627 | 124869 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 131 | 458675 | 458908 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 132 | 422567 | 422800 | + | NZ_CP041247.1 | Raoultella electrica |
| 133 | 1255624 | 1255857 | - | NZ_CP026047.1 | Raoultella planticola |
| 134 | 460906 | 461139 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 135 | 424134 | 424367 | + | NZ_CP050508.1 | Raoultella terrigena |
| 136 | 306040 | 306273 | + | NZ_LR134531.1 | Pragia fontium |
| 137 | 421994 | 422227 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 138 | 4869005 | 4869238 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 139 | 431529 | 431762 | + | NZ_CP054254.1 | Klebsiella variicola |
| 140 | 3827574 | 3827858 | + | NZ_CP038469.1 | Citrobacter tructae |
| 141 | 3827189 | 3827425 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 142 | 4446028 | 4446261 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 143 | 425799 | 426032 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 144 | 1191059 | 1191292 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 145 | 3429121 | 3429396 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 146 | 1444780 | 1445013 | - | NZ_CP053416.1 | Salmonella bongori |
| 147 | 2829236 | 2829469 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 148 | 27813 | 28046 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 149 | 2253404 | 2253637 | - | NZ_CP033744.1 | Citrobacter freundii |
| 150 | 2996485 | 2996718 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 151 | 543829 | 544062 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 152 | 133724 | 134008 | - | NZ_LR134167.1 | Avibacterium volantium |
| 153 | 3543731 | 3544006 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 154 | 3796714 | 3796947 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 155 | 223971 | 224204 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 156 | 3889730 | 3889963 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 157 | 3967085 | 3967318 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 158 | 77952 | 78185 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 159 | 4056974 | 4057207 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 160 | 504680 | 504913 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 161 | 3594649 | 3594882 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 162 | 272861 | 273094 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 163 | 4589467 | 4589700 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 164 | 389274 | 389558 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 165 | 421261 | 421494 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 166 | 2027947 | 2028180 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 167 | 4202108 | 4202341 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 168 | 405377 | 405610 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 169 | 4276095 | 4276328 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 170 | 4349750 | 4349983 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 171 | 4295031 | 4295264 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 172 | 4309498 | 4309731 | - | NC_015968.1 | Enterobacter soli |
| 173 | 3004560 | 3004793 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 174 | 4399045 | 4399278 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 175 | 2857592 | 2857825 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 176 | 4051638 | 4051871 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 177 | 3558659 | 3558892 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 178 | 1654519 | 1654752 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 179 | 4631148 | 4631381 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 180 | 4758839 | 4759072 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 181 | 450998 | 451231 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 182 | 978374 | 978607 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 183 | 5139304 | 5139537 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 184 | 4873009 | 4873242 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 185 | 1684819 | 1685052 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 186 | 250835 | 251137 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 187 | 962512 | 962814 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 188 | 1047586 | 1047840 | + | NZ_CP061800.1 | Desulfonema magnum |
| 189 | 2695967 | 2696200 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 190 | 105186 | 105419 | + | NZ_CP015581.1 | Tatumella citrea |
| 191 | 4029770 | 4030003 | + | NZ_CP067057.1 | Rahnella aceris |
| 192 | 3168633 | 3168866 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 193 | 4105306 | 4105539 | - | NZ_LS483422.1 | Providencia heimbachae |
| 194 | 4405094 | 4405327 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 195 | 4235193 | 4235426 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 196 | 2136532 | 2136765 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 197 | 478311 | 478544 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 198 | 519360 | 519593 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 199 | 4395632 | 4395865 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 200 | 3208437 | 3208670 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 201 | 4734580 | 4734813 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 202 | 1136818 | 1137051 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 203 | 2214834 | 2215136 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 204 | 392993 | 393226 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 205 | 4875577 | 4875810 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 206 | 4074394 | 4074681 | - | NC_012108.1 | Desulfobacterium autotrophicum HRM2 |
| 207 | 304285 | 304569 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 208 | 208656 | 208940 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 209 | 218950 | 219234 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 210 | 413066 | 413350 | - | NZ_LT906463.1 | Haemophilus pittmaniae |
| 211 | 1607021 | 1607308 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 212 | 2004654 | 2004941 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 213 | 2448989 | 2449222 | - | NZ_CP049115.1 | Pantoea stewartii |
| 214 | 456764 | 456997 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 215 | 170810 | 171043 | + | NZ_CP009056.1 | Frischella perrara |
| 216 | 308884 | 309117 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 217 | 1267119 | 1267352 | - | NZ_CP007230.1 | Yersinia similis |
| 218 | 1820520 | 1820804 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 219 | 16386 | 16670 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 220 | 3004573 | 3004806 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 221 | 1565166 | 1565399 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 222 | 4367396 | 4367629 | - | NZ_CP043727.1 | Yersinia canariae |
| 223 | 333517 | 333750 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 224 | 4381502 | 4381735 | - | NZ_CP032487.1 | Yersinia hibernica |
| 225 | 137945 | 138178 | + | NZ_CP046293.1 | Yersinia intermedia |
| 226 | 2522664 | 2522897 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 227 | 1081887 | 1082165 | + | NZ_CP035108.1 | Geovibrio thiophilus |
| 228 | 411397 | 411630 | + | NZ_CP025120.1 | Kangiella profundi |
| 229 | 465448 | 465681 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 230 | 5496656 | 5496889 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 231 | 4200994 | 4201266 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 232 | 4065235 | 4065522 | - | NC_018645.1 | Desulfobacula toluolica Tol2 |
| 233 | 310626 | 310859 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 234 | 3484554 | 3484787 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 235 | 3531193 | 3531426 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 236 | 314057 | 314290 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 237 | 1018598 | 1018885 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 238 | 2593163 | 2593396 | - | NZ_CP009787.1 | Yersinia rohdei |
| 239 | 6074945 | 6075235 | + | NC_018025.1 | Desulfomonile tiedjei DSM 6799 |
| 240 | 502312 | 502608 | + | NZ_CP014544.1 | Zhongshania aliphaticivorans |
| 241 | 1657492 | 1657749 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 242 | 2470616 | 2470855 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 243 | 3431439 | 3431741 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 244 | 3615090 | 3615323 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 245 | 456241 | 456474 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 246 | 466377 | 466610 | + | NZ_CP038853.1 | Pantoea vagans |
| 247 | 2039662 | 2039901 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 248 | 114716 | 115003 | - | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 249 | 2320566 | 2320871 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 250 | 1918671 | 1918964 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 251 | 237925 | 238158 | + | NZ_LR134201.1 | Cedecea lapagei |
| 252 | 233403 | 233636 | + | NZ_CP023525.1 | Cedecea neteri |
| 253 | 3259103 | 3259375 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 254 | 1784474 | 1784713 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 255 | 2978385 | 2978624 | - | NC_011753.2 | Vibrio atlanticus |
| 256 | 309767 | 310006 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 257 | 1550805 | 1551092 | + | NZ_CP009498.1 | Endomicrobium proavitum |
| 258 | 2051124 | 2051408 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 259 | 2916048 | 2916302 | - | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 260 | 1546648 | 1546887 | - | NZ_CP019959.1 | Vibrio owensii |
| 261 | 460470 | 460772 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 262 | 27981 | 28265 | + | NZ_CP023668.1 | Mesoplasma lactucae ATCC 49193 |
| 263 | 2719745 | 2719984 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 264 | 2856206 | 2856445 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 265 | 2622829 | 2623068 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 266 | 127807 | 128046 | - | NC_013456.1 | Vibrio antiquarius |
| 267 | 277397 | 277636 | + | NZ_CP030788.1 | Vibrio campbellii |
| 268 | 2998948 | 2999187 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 269 | 252365 | 252604 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 270 | 2825339 | 2825578 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 271 | 485097 | 485336 | + | NZ_CP009467.1 | Vibrio harveyi |
| 272 | 1959126 | 1959365 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 273 | 2854424 | 2854663 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 274 | 2942480 | 2942719 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 275 | 431714 | 431956 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 276 | 170820 | 171104 | + | NZ_CP023173.1 | Mesoplasma chauliocola |
| 277 | 2464020 | 2464277 | + | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 278 | 148645 | 148929 | + | NC_006055.1 | Mesoplasma florum L1 |
| 279 | 146816 | 147100 | + | NZ_CP024969.1 | Mesoplasma tabanidae |
| 280 | 149527 | 149811 | + | NZ_CP024411.1 | Mesoplasma entomophilum |
| 281 | 441833 | 442069 | + | NZ_AP022873.1 | Dissulfurispira thermophila |
| 282 | 154679 | 154963 | + | NZ_CP024964.1 | Entomoplasma melaleucae |
| 283 | 9028635 | 9028931 | - | NZ_CP016211.1 | Minicystis rosea |
| 284 | 2936494 | 2936760 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 285 | 650689 | 650979 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 286 | 345083 | 345313 | + | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 287 | 2177093 | 2177326 | - | NZ_CP060436.1 | Pseudooceanicola algae |
| 288 | 146919 | 147203 | + | NZ_CP025257.1 | Mesoplasma syrphidae |
| 289 | 397601 | 397879 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 290 | 138005 | 138244 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 291 | 2739529 | 2739795 | - | NZ_CP072793.1 | Thiothrix unzii |
| 292 | 810028 | 810312 | - | NZ_CP001668.1 | Mycoplasma mycoides subsp. capri str. GM12 |
| 293 | 4576247 | 4576477 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 294 | 608184 | 608459 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 295 | 2104552 | 2104791 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 296 | 230706 | 230939 | - | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 297 | 158568 | 158837 | + | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 298 | 2597336 | 2597581 | - | NC_018870.1 | Thermacetogenium phaeum DSM 12270 |
| 299 | 882213 | 882503 | + | NC_014972.1 | Desulfobulbus propionicus DSM 2032 |
| 300 | 4039966 | 4040199 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 301 | 853365 | 853649 | - | NC_021833.1 | Spiroplasma diminutum CUAS-1 |
| 302 | 1670228 | 1670527 | + | NZ_CP031252.1 | Neisseria elongata |
| 303 | 395109 | 395342 | + | NZ_CP016364.1 | Phaeobacter porticola |
| 304 | 1362264 | 1362515 | + | NZ_LR134533.1 | Neisseria weaveri |
| 305 | 2422864 | 2423154 | - | NZ_CP021255.1 | Desulfobulbus oralis |
| 306 | 633703 | 633990 | + | NZ_CP009761.1 | Parvimonas micra |
| 307 | 2663366 | 2663596 | - | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 308 | 2013083 | 2013337 | + | NZ_CP061205.1 | Kordiimonas pumila |
| 309 | 2552407 | 2552640 | - | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 310 | 747808 | 748041 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 311 | 2373350 | 2373580 | - | NC_018664.1 | Gottschalkia acidurici 9a |
| 312 | 1345737 | 1345970 | + | NZ_CP049246.1 | Sphingobacterium lactis |
| 313 | 405063 | 405308 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 314 | 1421030 | 1421332 | + | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 315 | 233484 | 233738 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 316 | 1039247 | 1039486 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 317 | 2185990 | 2186289 | - | NZ_CP059569.1 | Kingella oralis |
| 318 | 855726 | 856010 | - | NZ_CP006934.1 | Spiroplasma sabaudiense Ar-1343 |
| 319 | 1292249 | 1292482 | + | NZ_LS483464.1 | Corynebacterium renale |
| 320 | 2270385 | 2270618 | - | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 321 | 1295757 | 1296017 | + | NC_011026.1 | Chloroherpeton thalassium ATCC 35110 |
| 322 | 373604 | 373858 | + | NZ_CP059571.1 | Neisseria bacilliformis |
| 323 | 425277 | 425510 | + | NZ_CP039247.1 | Corynebacterium endometrii |
| 324 | 131238 | 131474 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 325 | 5478972 | 5479232 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 326 | 33285 | 33566 | + | NC_010645.1 | Bordetella avium 197N |
| 327 | 32543 | 32824 | + | NZ_CP043146.1 | Bordetella holmesii |
| 328 | 2460219 | 2460500 | - | NZ_LR134302.1 | Achromobacter spanius |
| 329 | 6347007 | 6347288 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 330 | 4916979 | 4917260 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 331 | 4428278 | 4428559 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 332 | 1567448 | 1567729 | - | NZ_CP021395.1 | Bordetella hinzii |
| 333 | 5210327 | 5210608 | - | NC_010170.1 | Bordetella petrii |
| 334 | 3286870 | 3287151 | - | NC_018518.1 | Bordetella pertussis 18323 |
| 335 | 4119184 | 4119465 | + | NZ_AP019378.1 | Bordetella parapertussis |
| 336 | 5136253 | 5136534 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 337 | 4118562 | 4118798 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 338 | 921767 | 922051 | - | NZ_CP022278.1 | Neisseria chenwenguii |
| 339 | 3780466 | 3780702 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010814.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00338.24 | 0.98 | 331 | 1344.0 | same-strand | Ribosomal protein S10p/S20e |
| 2 | PF00573.24 | 0.96 | 325 | 60.0 | same-strand | Ribosomal protein L4/L1 family |
| 3 | PF03947.20 | 0.96 | 325 | 18.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 4 | PF00181.25 | 0.99 | 335 | 18.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 5 | PF00203.23 | 0.95 | 322 | 858 | same-strand | Ribosomal protein S19 |
| 6 | PF00237.21 | 0.97 | 327 | 1150.0 | same-strand | Ribosomal protein L22p/L17e |
| 7 | PF00189.22 | 0.96 | 324 | 1500 | same-strand | Ribosomal protein S3, C-terminal domain |
| 8 | PF07650.19 | 0.96 | 324 | 1500 | same-strand | KH domain |
| 9 | PF00252.20 | 0.94 | 317 | 2213.0 | same-strand | Ribosomal protein L16p/L10e |
++ More..