* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00823.21
|
1.0
|
2
|
2790.0
|
opposite-strand
|
PPE family
|
2
|
PF01469.20
|
1.0
|
2
|
2790.0
|
opposite-strand
|
Pentapeptide repeats (8 copies)
|
3
|
PF03129.22
|
1.0
|
2
|
-94.0
|
opposite-strand
|
Anticodon binding domain
|
4
|
PF01022.22
|
1.0
|
2
|
82.0
|
same-strand
|
Bacterial regulatory protein, arsR family
|
5
|
PF12840.9
|
1.0
|
2
|
82.0
|
same-strand
|
Helix-turn-helix domain
|
6
|
PF01475.21
|
1.0
|
2
|
486.0
|
same-strand
|
Ferric uptake regulator family
|
7
|
PF01255.21
|
1.0
|
2
|
1414.0
|
opposite-strand
|
Putative undecaprenyl diphosphate synthase
|
8
|
PF02565.17
|
1.0
|
2
|
2297.0
|
opposite-strand
|
Recombination protein O C terminal
|
9
|
PF11967.10
|
1.0
|
2
|
2297.0
|
opposite-strand
|
Recombination protein O N terminal
|
++ More..