* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01083.24
|
1.0
|
2
|
3091.0
|
opposite-strand
|
Cutinase
|
2
|
PF02594.18
|
1.0
|
2
|
2746.0
|
same-strand
|
Uncharacterised ACR, YggU family COG1872
|
3
|
PF00126.29
|
1.0
|
2
|
1750.0
|
opposite-strand
|
Bacterial regulatory helix-turn-helix protein, lysR family
|
4
|
PF03466.22
|
1.0
|
2
|
1750.0
|
opposite-strand
|
LysR substrate binding domain
|
5
|
PF01810.20
|
1.0
|
2
|
1042.0
|
same-strand
|
LysE type translocator
|
++ More..