* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00934.22
|
0.67
|
2
|
4090.0
|
same-strand
|
PE family
|
2
|
PF01168.22
|
0.67
|
2
|
2690.0
|
same-strand
|
Alanine racemase, N-terminal domain
|
3
|
PF04389.19
|
0.67
|
2
|
1396.0
|
same-strand
|
Peptidase family M28
|
4
|
PF04030.16
|
0.67
|
2
|
113.0
|
same-strand
|
D-arabinono-1,4-lactone oxidase
|
5
|
PF01565.25
|
0.67
|
2
|
645.0
|
same-strand
|
FAD binding domain
|
6
|
PF03861.16
|
0.67
|
2
|
8.0
|
same-strand
|
ANTAR domain
|
7
|
PF01614.20
|
0.67
|
2
|
365.0
|
opposite-strand
|
Bacterial transcriptional regulator
|
8
|
PF09339.12
|
0.67
|
2
|
365.0
|
opposite-strand
|
IclR helix-turn-helix domain
|
9
|
PF18089.3
|
0.67
|
2
|
2517.0
|
same-strand
|
DAPG hydrolase PhiG domain
|
10
|
PF00440.25
|
0.67
|
2
|
3340.0
|
opposite-strand
|
Bacterial regulatory proteins, tetR family
|
++ More..