* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00441.26
|
1.0
|
2
|
3046.0
|
same-strand
|
Acyl-CoA dehydrogenase, C-terminal domain
|
2
|
PF02770.21
|
1.0
|
2
|
3046.0
|
same-strand
|
Acyl-CoA dehydrogenase, middle domain
|
3
|
PF08028.13
|
1.0
|
2
|
3046.0
|
same-strand
|
Acyl-CoA dehydrogenase, C-terminal domain
|
4
|
PF12974.9
|
1.0
|
2
|
2213.0
|
same-strand
|
ABC transporter, phosphonate, periplasmic substrate-binding protein
|
5
|
PF04055.23
|
1.0
|
2
|
1224.0
|
same-strand
|
Radical SAM superfamily
|
6
|
PF05103.15
|
1.0
|
2
|
146.0
|
same-strand
|
DivIVA protein
|
7
|
PF00501.30
|
1.0
|
2
|
72.0
|
same-strand
|
AMP-binding enzyme
|
8
|
PF12697.9
|
1.0
|
2
|
72.0
|
same-strand
|
Alpha/beta hydrolase family
|
9
|
PF03966.18
|
1.0
|
2
|
3061.0
|
same-strand
|
Trm112p-like protein
|
10
|
PF17920.3
|
1.0
|
2
|
3251.0
|
opposite-strand
|
Tetracyclin repressor-like, C-terminal domain
|
11
|
PF00440.25
|
1.0
|
2
|
3251.0
|
opposite-strand
|
Bacterial regulatory proteins, tetR family
|
12
|
PF01061.26
|
1.0
|
2
|
3876.0
|
opposite-strand
|
ABC-2 type transporter
|
13
|
PF00005.29
|
1.0
|
2
|
4628.0
|
opposite-strand
|
ABC transporter
|
++ More..