* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00288.28
|
1.0
|
2
|
4177.0
|
same-strand
|
GHMP kinases N terminal domain
|
2
|
PF07497.14
|
1.0
|
2
|
2112.0
|
same-strand
|
Rho termination factor, RNA-binding domain
|
3
|
PF00006.27
|
1.0
|
2
|
2112.0
|
same-strand
|
ATP synthase alpha/beta family, nucleotide-binding domain
|
4
|
PF07498.14
|
1.0
|
2
|
2112.0
|
same-strand
|
Rho termination factor, N-terminal domain
|
5
|
PF01197.20
|
1.0
|
2
|
1719.0
|
same-strand
|
Ribosomal protein L31
|
6
|
PF03462.20
|
1.0
|
2
|
556.0
|
same-strand
|
PCRF domain
|
7
|
PF00472.22
|
1.0
|
2
|
556.0
|
same-strand
|
RF-1 domain
|
8
|
PF17827.3
|
1.0
|
2
|
-56.0
|
same-strand
|
PrmC N-terminal domain
|
9
|
PF01300.20
|
1.0
|
2
|
378.0
|
same-strand
|
Telomere recombination
|
10
|
PF00953.23
|
1.0
|
2
|
1115.0
|
same-strand
|
Glycosyl transferase family 4
|
11
|
PF03899.17
|
1.0
|
2
|
2586.0
|
same-strand
|
ATP synthase I chain
|
12
|
PF00119.22
|
1.0
|
2
|
3064.0
|
same-strand
|
ATP synthase A chain
|
13
|
PF00137.23
|
1.0
|
2
|
3865.0
|
same-strand
|
ATP synthase subunit C
|
++ More..