Result : EXP01919
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01919 |
| NCBI Accession ID | NC_000962.3 |
| Organism | Mycobacterium tuberculosis H37Rv |
| Left | 1306782 |
| Right | 1306853 |
| Strand | + |
| Nucleotide Sequence | ATGGGGTGGTCGATGCCGGGGATGGCCGGAATGCGCGGTGCCACGCCGGTGGCCAAGACGACCTCGTCGTAG |
| Sequence | MGWSMPGMAGMRGATPVAKTTSS |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 26536359 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 23 |
++ More..
| Conservation Analysis |
No. of Species: 98
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1326835 | 1326906 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 2 | 1306782 | 1306853 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 3 | 416154 | 416225 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 4 | 52814 | 52873 | - | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 5 | 9081066 | 9081125 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 6 | 3445423 | 3445482 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 7 | 2594897 | 2594956 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 8 | 864156 | 864215 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 9 | 6228719 | 6228778 | - | NZ_AP023396.1 | Nocardia wallacei |
| 10 | 833866 | 833937 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 11 | 5300071 | 5300130 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 12 | 1275330 | 1275401 | + | NZ_CP012418.1 | Kangiella sediminilitoris |
| 13 | 2990483 | 2990542 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 14 | 391945 | 392016 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 15 | 1362877 | 1362948 | + | NZ_CP023701.1 | Streptomyces subrutilus |
| 16 | 3182363 | 3182422 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 17 | 3029154 | 3029219 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 18 | 608423 | 608494 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 19 | 2655545 | 2655604 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 20 | 114891 | 114950 | - | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 21 | 6378760 | 6378831 | - | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 22 | 1424852 | 1424911 | + | NZ_CP015961.1 | Dietzia timorensis |
| 23 | 2028896 | 2028955 | + | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 24 | 892443 | 892502 | + | NZ_CP011125.1 | Sandaracinus amylolyticus |
| 25 | 4026589 | 4026660 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 26 | 3633932 | 3634003 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 27 | 7568421 | 7568492 | - | NZ_CP071139.1 | Streptomyces nojiriensis |
| 28 | 1233613 | 1233684 | - | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 29 | 3471359 | 3471418 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 30 | 9295553 | 9295624 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 31 | 1650066 | 1650137 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 32 | 3816314 | 3816385 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 33 | 1703968 | 1704027 | + | NZ_CP014671.1 | Immundisolibacter cernigliae |
| 34 | 1963682 | 1963747 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 35 | 1548879 | 1548950 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 36 | 659945 | 660016 | - | NZ_CP065748.1 | Delftia lacustris |
| 37 | 2048774 | 2048845 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 38 | 4414240 | 4414311 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 39 | 482572 | 482631 | - | NZ_CP048832.1 | Janthinobacterium lividum |
| 40 | 1489573 | 1489635 | + | NC_013166.1 | Kangiella koreensis DSM 16069 |
| 41 | 4046836 | 4046907 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 42 | 6425695 | 6425754 | - | NZ_AP017900.1 | Nocardia seriolae |
| 43 | 3799274 | 3799345 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 44 | 4235237 | 4235308 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 45 | 1433350 | 1433409 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 46 | 1890800 | 1890871 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 47 | 1118024 | 1118083 | + | NZ_LS483250.1 | Moritella yayanosii |
| 48 | 2255846 | 2255917 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 49 | 1384989 | 1385060 | + | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 50 | 3766494 | 3766565 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 51 | 2136452 | 2136511 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 52 | 766304 | 766375 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 53 | 5743321 | 5743392 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 54 | 1771372 | 1771443 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 55 | 2533849 | 2533920 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 56 | 4274284 | 4274355 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 57 | 3080556 | 3080615 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 58 | 2700449 | 2700517 | + | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 59 | 5152044 | 5152109 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 60 | 1825179 | 1825250 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 61 | 1713647 | 1713721 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 62 | 4359876 | 4359947 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 63 | 731394 | 731459 | - | NZ_CP008849.1 | Alteromonas australica |
| 64 | 1788676 | 1788747 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 65 | 4384499 | 4384558 | - | NZ_CP041185.1 | Janthinobacterium tructae |
| 66 | 2376111 | 2376182 | + | NZ_CP060790.1 | Acidovorax monticola |
| 67 | 1070389 | 1070460 | - | NZ_CP039288.1 | Cupriavidus necator H16 |
| 68 | 1048665 | 1048745 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 69 | 2371303 | 2371368 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 70 | 2460786 | 2460845 | - | NC_017080.1 | Phycisphaera mikurensis NBRC 102666 |
| 71 | 2210901 | 2210972 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 72 | 1924425 | 1924496 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 73 | 2164689 | 2164760 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 74 | 4039096 | 4039155 | - | NZ_LR134201.1 | Cedecea lapagei |
| 75 | 1422849 | 1422920 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 76 | 3746341 | 3746412 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 77 | 4671059 | 4671118 | + | NZ_CP036274.1 | Anatilimnocola aggregata |
| 78 | 2184711 | 2184782 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 79 | 4782062 | 4782121 | + | NZ_CP036299.1 | Planctopirus ephydatiae |
| 80 | 4009987 | 4010067 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 81 | 758623 | 758694 | - | NZ_CP046269.1 | Vibrio spartinae |
| 82 | 2415963 | 2416022 | + | NC_015588.1 | Isoptericola variabilis 225 |
| 83 | 4342345 | 4342404 | - | NZ_CP014168.1 | Sphingomonas panacis |
| 84 | 4211748 | 4211807 | + | NZ_CP067057.1 | Rahnella aceris |
| 85 | 507974 | 508033 | - | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 86 | 1817735 | 1817794 | - | NZ_CP021255.1 | Desulfobulbus oralis |
| 87 | 3826321 | 3826380 | - | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 88 | 3605301 | 3605363 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 89 | 955376 | 955435 | - | NZ_CP015449.1 | Dietzia lutea |
| 90 | 10107250 | 10107312 | + | NZ_CP012159.1 | Chondromyces crocatus |
| 91 | 2726856 | 2726915 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 92 | 99304 | 99363 | + | NC_008010.2 | Deinococcus geothermalis DSM 11300 |
| 93 | 1615010 | 1615069 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 94 | 1008851 | 1008910 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 95 | 2562247 | 2562306 | + | NC_013223.1 | Desulfohalobium retbaense DSM 5692 |
| 96 | 3925071 | 3925130 | + | NC_018012.1 | Thiocystis violascens DSM 198 |
| 97 | 3719485 | 3719544 | - | NZ_CP041091.1 | Nocardioides sambongensis |
| 98 | 2716472 | 2716543 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 99 | 479617 | 479676 | - | NZ_LT906467.1 | Corynebacterium imitans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00724.22 | 0.78 | 76 | -71.0 | opposite-strand | NADH:flavin oxidoreductase / NADH oxidase family |
| 2 | PF07992.16 | 0.99 | 97 | -65.0 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
++ More..