* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015848.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00934.22
|
1.0
|
2
|
1452.5
|
opposite-strand
|
PE family
|
2
|
PF02585.19
|
1.0
|
2
|
1640.0
|
same-strand
|
GlcNAc-PI de-N-acetylase
|
3
|
PF04055.23
|
1.0
|
2
|
170.0
|
same-strand
|
Radical SAM superfamily
|
4
|
PF00724.22
|
1.0
|
2
|
3269.0
|
opposite-strand
|
NADH:flavin oxidoreductase / NADH oxidase family
|
5
|
PF07992.16
|
1.0
|
2
|
3269.0
|
opposite-strand
|
Pyridine nucleotide-disulphide oxidoreductase
|
6
|
PF00070.29
|
1.0
|
2
|
3269.0
|
opposite-strand
|
Pyridine nucleotide-disulphide oxidoreductase
|
7
|
PF10400.11
|
1.0
|
2
|
5290.0
|
opposite-strand
|
Virulence activator alpha C-term
|
8
|
PF03551.16
|
1.0
|
2
|
5290.0
|
opposite-strand
|
Transcriptional regulator PadR-like family
|
9
|
PF00037.29
|
1.0
|
2
|
6072.0
|
same-strand
|
4Fe-4S binding domain
|
10
|
PF12838.9
|
1.0
|
2
|
6072.0
|
same-strand
|
4Fe-4S dicluster domain
|
11
|
PF13187.8
|
1.0
|
2
|
6072.0
|
same-strand
|
4Fe-4S dicluster domain
|
12
|
PF12800.9
|
1.0
|
2
|
6072.0
|
same-strand
|
4Fe-4S binding domain
|
++ More..