Result : EXP01896
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01896 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 141740 |
| Right | 141850 |
| Strand | - |
| Nucleotide Sequence | ATGGATCCGAATCCTGACTACGATCTCAGCGACGAAGGCGAGTTCTTCTTCAACTGGATCCCGTGGGGCCTTCGTGGCGTGTACCCGCCGCCGGCCTATCCCCCGGTGTAA |
| Sequence | MDPNPDYDLSDEGEFFFNWIPWGLRGVYPPPAYPPV |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 36 |
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| Conservation Analysis |
No. of Species: 40
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 156434 | 156544 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 576337 | 576447 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 3 | 1721596 | 1721706 | - | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 4 | 89062 | 89172 | + | NZ_AP022611.1 | Mycolicibacterium madagascariense |
| 5 | 997476 | 997592 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 6 | 6135937 | 6136062 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 7 | 5307399 | 5307503 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 8 | 1869670 | 1869795 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 9 | 1710888 | 1711016 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 10 | 2523737 | 2523847 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 11 | 1877317 | 1877427 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 12 | 5760507 | 5760617 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 13 | 2064868 | 2064978 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 14 | 3580849 | 3580950 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 15 | 1972009 | 1972110 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 16 | 718996 | 719112 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 17 | 5636902 | 5637012 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 18 | 3395303 | 3395413 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 19 | 4453881 | 4453991 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 20 | 2553340 | 2553456 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 21 | 1458296 | 1458427 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 22 | 2156210 | 2156320 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 23 | 1865664 | 1865774 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 24 | 4579907 | 4580017 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 25 | 1179223 | 1179333 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 26 | 4807870 | 4807980 | + | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 27 | 4721907 | 4722017 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 28 | 6031499 | 6031609 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 29 | 1416166 | 1416294 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 30 | 3071653 | 3071766 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 31 | 99965 | 100066 | - | NC_015576.1 | Mycolicibacter sinensis |
| 32 | 1857872 | 1857973 | + | NZ_AP022562.1 | Mycobacterium novum |
| 33 | 749546 | 749656 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 34 | 1587903 | 1588013 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 35 | 117253 | 117363 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 36 | 3063056 | 3063166 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 37 | 4674791 | 4674901 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 38 | 721814 | 721924 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 39 | 4354696 | 4354806 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 40 | 296338 | 296448 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 41 | 121903 | 122013 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 42 | 2243385 | 2243495 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 43 | 1332363 | 1332473 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 44 | 4491906 | 4492016 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 45 | 138398 | 138508 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 46 | 4382012 | 4382122 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF17932.3 | 0.68 | 27 | 148 | opposite-strand | Tetracyclin repressor-like, C-terminal domain |
| 2 | PF00440.25 | 0.7 | 28 | 162.5 | opposite-strand | Bacterial regulatory proteins, tetR family |
++ More..