* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00916.22
|
0.67
|
2
|
3185.0
|
opposite-strand
|
Sulfate permease family
|
2
|
PF01740.23
|
0.67
|
2
|
3185.0
|
opposite-strand
|
STAS domain
|
3
|
PF00171.24
|
0.67
|
2
|
1842.0
|
same-strand
|
Aldehyde dehydrogenase family
|
4
|
PF07992.16
|
0.67
|
2
|
441.5
|
same-strand
|
Pyridine nucleotide-disulphide oxidoreductase
|
5
|
PF14691.8
|
0.67
|
2
|
441.5
|
same-strand
|
Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
|
6
|
PF00310.23
|
0.67
|
2
|
1900.5
|
same-strand
|
Glutamine amidotransferases class-II
|
7
|
PF01645.19
|
0.67
|
2
|
1900.5
|
same-strand
|
Conserved region in glutamate synthase
|
8
|
PF04898.16
|
0.67
|
2
|
1900.5
|
same-strand
|
Glutamate synthase central domain
|
9
|
PF01493.21
|
0.67
|
2
|
1900.5
|
same-strand
|
GXGXG motif
|
10
|
PF03061.24
|
0.67
|
2
|
7202.5
|
opposite-strand
|
Thioesterase superfamily
|
11
|
PF00654.22
|
0.67
|
2
|
8034.0
|
opposite-strand
|
Voltage gated chloride channel
|
++ More..