Result : EXP01886
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01886 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 4873535 |
| Right | 4873615 |
| Strand | - |
| Nucleotide Sequence | GTGAGCGCATGGCGGGATATAAGGTGCCCCGGTATGTGGAGTTTCTCGAAGAGCTACCCCTCAATGCCACGGGCAAGGTGA |
| Sequence | VSAWRDIRCPGMWSFSKSYPSMPRAR |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 26 |
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| Conservation Analysis |
No. of Species: 3
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4884133 | 4884213 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 3531942 | 3532025 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 3 | 315811 | 315876 | + | NC_013532.1 | Anaplasma centrale str. Israel |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00501.30 | 0.67 | 2 | 1265.0 | same-strand | AMP-binding enzyme |
| 2 | PF13193.8 | 0.67 | 2 | 1265.0 | same-strand | AMP-binding enzyme C-terminal domain |
| 3 | PF04909.16 | 0.67 | 2 | 1399.0 | same-strand | Amidohydrolase |
| 4 | PF01796.19 | 0.67 | 2 | 5353.0 | opposite-strand | DUF35 OB-fold domain, acyl-CoA-associated |
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