* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00501.30
|
1.0
|
2
|
2371.0
|
same-strand
|
AMP-binding enzyme
|
2
|
PF13193.8
|
1.0
|
2
|
2371.0
|
same-strand
|
AMP-binding enzyme C-terminal domain
|
3
|
PF13450.8
|
1.0
|
2
|
329.0
|
opposite-strand
|
NAD(P)-binding Rossmann-like domain
|
4
|
PF00106.27
|
1.0
|
2
|
-44.0
|
opposite-strand
|
short chain dehydrogenase
|
5
|
PF07876.14
|
1.0
|
2
|
518.5
|
same-strand
|
Stress responsive A/B Barrel Domain
|
6
|
PF07859.15
|
1.0
|
2
|
2794.5
|
same-strand
|
alpha/beta hydrolase fold
|
7
|
PF01614.20
|
1.0
|
2
|
3740.0
|
same-strand
|
Bacterial transcriptional regulator
|
8
|
PF09339.12
|
1.0
|
2
|
3740.0
|
same-strand
|
IclR helix-turn-helix domain
|
++ More..