* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00083.26
|
1.0
|
2
|
714.0
|
same-strand
|
Sugar (and other) transporter
|
2
|
PF00075.26
|
1.0
|
2
|
-143.0
|
same-strand
|
RNase H
|
3
|
PF04982.15
|
1.0
|
2
|
-12.0
|
opposite-strand
|
HPP family
|
4
|
PF12833.9
|
1.0
|
2
|
1307.0
|
opposite-strand
|
Helix-turn-helix domain
|
5
|
PF00165.25
|
1.0
|
2
|
1307.0
|
opposite-strand
|
Bacterial regulatory helix-turn-helix proteins, AraC family
|
6
|
PF01965.26
|
1.0
|
2
|
1307.0
|
opposite-strand
|
DJ-1/PfpI family
|
++ More..