Result : EXP01844
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01844 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 5306665 |
| Right | 5306808 |
| Strand | + |
| Nucleotide Sequence | GTGGTCAGCCCAGAAGGTGTCGCAGAGTTCCTGGAGAAGGTCCCCGCCGCGGAGTTCGTCGAACTCTCCGATGCCGGGCACACCGCAGCAGGCGACGACAACGACGCATTCACCCAGGTCGTCGTGGAGTTCGTGAACCGGTGA |
| Sequence | VVSPEGVAEFLEKVPAAEFVELSDAGHTAAGDDNDAFTQVVVEFVNR |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 47 |
++ More..
| Conservation Analysis |
No. of Species: 86
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5316708 | 5316851 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 3072911 | 3073054 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 3 | 2858079 | 2858222 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 4 | 5035303 | 5035446 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 5 | 4182611 | 4182775 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 6 | 4762146 | 4762289 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 7 | 539792 | 539935 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 8 | 1765706 | 1765849 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 9 | 3581672 | 3581815 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 10 | 3447669 | 3447821 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 11 | 4954167 | 4954319 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 12 | 277857 | 278000 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 13 | 3178692 | 3178835 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 14 | 1351554 | 1351685 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 15 | 176654 | 176812 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 16 | 1629328 | 1629486 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 17 | 5303913 | 5304056 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 18 | 1785019 | 1785177 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 19 | 3933745 | 3933888 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 20 | 3161140 | 3161304 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 21 | 832059 | 832226 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 22 | 4493298 | 4493441 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 23 | 57276 | 57401 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 24 | 5171794 | 5171955 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 25 | 5199024 | 5199185 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 26 | 3271995 | 3272138 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 27 | 1966575 | 1966718 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 28 | 4375109 | 4375255 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 29 | 1370294 | 1370452 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 30 | 2676933 | 2677076 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 31 | 5843595 | 5843741 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 32 | 1115725 | 1115868 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 33 | 2663465 | 2663608 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 34 | 4898457 | 4898576 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 35 | 5714565 | 5714705 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 36 | 419165 | 419329 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 37 | 4055585 | 4055728 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 38 | 257248 | 257412 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 39 | 1116552 | 1116698 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 40 | 2183589 | 2183738 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 41 | 1157243 | 1157389 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 42 | 1148453 | 1148599 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 43 | 2172534 | 2172677 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 44 | 4484025 | 4484168 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 45 | 1127509 | 1127655 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 46 | 2073124 | 2073255 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 47 | 4181795 | 4181947 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 48 | 3735257 | 3735400 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 49 | 196973 | 197116 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 50 | 1119817 | 1119966 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 51 | 50972 | 51124 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 52 | 2631258 | 2631383 | - | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 53 | 4526127 | 4526270 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 54 | 1144009 | 1144152 | - | NC_015576.1 | Mycolicibacter sinensis |
| 55 | 840260 | 840403 | + | NZ_AP022562.1 | Mycobacterium novum |
| 56 | 2844064 | 2844198 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 57 | 655467 | 655613 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 58 | 2907598 | 2907744 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 59 | 1082983 | 1083126 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 60 | 964728 | 964880 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 61 | 4917869 | 4918012 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 62 | 3960190 | 3960339 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 63 | 898596 | 898748 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 64 | 1112500 | 1112643 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 65 | 4122265 | 4122429 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 66 | 1240666 | 1240836 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 67 | 4573277 | 4573420 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 68 | 1246144 | 1246293 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 69 | 1263853 | 1264002 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 70 | 2245234 | 2245380 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 71 | 95365 | 95511 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 72 | 2929315 | 2929458 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 73 | 2538628 | 2538792 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 74 | 4950280 | 4950423 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 75 | 348983 | 349147 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 76 | 5510258 | 5510398 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 77 | 5618724 | 5618876 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 78 | 5352004 | 5352174 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 79 | 3943433 | 3943564 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 80 | 722160 | 722288 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 81 | 4608918 | 4609061 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 82 | 2848908 | 2849054 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 83 | 502494 | 502637 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 84 | 4348658 | 4348810 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 85 | 4960448 | 4960618 | - | NZ_LR134352.1 | Nocardia asteroides |
| 86 | 1382790 | 1382957 | - | NZ_LR134352.1 | Nocardia asteroides |
| 87 | 6103188 | 6103358 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 88 | 587404 | 587550 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 89 | 4071433 | 4071570 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 90 | 3621240 | 3621392 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 91 | 8840794 | 8840946 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 92 | 1890048 | 1890194 | + | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 93 | 3053383 | 3053532 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 94 | 4368043 | 4368186 | + | NC_014666.1 | Frankia inefficax |
| 95 | 2291329 | 2291466 | - | NZ_CP033972.1 | Gordonia insulae |
| 96 | 3294306 | 3294452 | - | NZ_CP033972.1 | Gordonia insulae |
| 97 | 199110 | 199241 | - | NZ_AP022578.1 | Mycolicibacterium aubagnense |
| 98 | 3269701 | 3269859 | - | NZ_AP023396.1 | Nocardia wallacei |
| 99 | 2176510 | 2176659 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 100 | 1888371 | 1888541 | + | NC_020520.1 | Ilumatobacter coccineus YM16-304 |
| 101 | 707889 | 708014 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 102 | 2559937 | 2560101 | - | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 103 | 3910756 | 3910914 | + | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 104 | 3382619 | 3382783 | - | NZ_AP017900.1 | Nocardia seriolae |
| 105 | 391163 | 391321 | + | NZ_CP013451.1 | Burkholderia cenocepacia |
| 106 | 3004282 | 3004443 | + | NZ_CP011310.1 | Aurantiacibacter atlanticus |
| 107 | 4046909 | 4047049 | + | NZ_CP020104.1 | Spirosoma aerolatum |
| 108 | 907936 | 908094 | + | NC_007509.1 | Burkholderia lata |
| 109 | 1012832 | 1012978 | + | NZ_CP041046.1 | Luteibacter pinisoli |
| 110 | 252822 | 252986 | + | NZ_AP018560.1 | Aerosticca soli |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00440.25 | 0.6 | 52 | 1074.5 | opposite-strand | Bacterial regulatory proteins, tetR family |
++ More..