Result : EXP01840
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01840 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 5279899 |
| Right | 5280030 |
| Strand | + |
| Nucleotide Sequence | ATGTGGATCGACGACACCAGTGCCGATGTCATCAAGGTCGACTTCGAGGCTCTTTACCACGGCGATGTTCTCGTCGAGGGTGACACCTCGGAGCAGTTTGACGACTTCCAGCAACTGCCTACCGCGGTATGA |
| Sequence | MWIDDTSADVIKVDFEALYHGDVLVEGDTSEQFDDFQQLPTAV |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 43 |
++ More..
| Conservation Analysis |
No. of Species: 80
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3098356 | 3098487 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 2 | 5291620 | 5291751 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 3 | 2882549 | 2882680 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 4 | 4737588 | 4737719 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 5 | 2317981 | 2318112 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 6 | 512742 | 512873 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 7 | 5053563 | 5053694 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 8 | 1791086 | 1791217 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 9 | 3666741 | 3666872 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 10 | 3022162 | 3022293 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 11 | 5337131 | 5337262 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 12 | 4539503 | 4539634 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 13 | 2017560 | 2017691 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 14 | 3213723 | 3213854 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 15 | 4914041 | 4914172 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 16 | 4572836 | 4572967 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 17 | 2714057 | 2714188 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 18 | 4997561 | 4997692 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 19 | 5279504 | 5279635 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 20 | 4500475 | 4500606 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 21 | 386609 | 386740 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 22 | 2880808 | 2880939 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 23 | 1292089 | 1292220 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 24 | 1272036 | 1272167 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 25 | 642458 | 642589 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 26 | 3613380 | 3613511 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 27 | 4876127 | 4876258 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 28 | 129252 | 129383 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 29 | 680032 | 680157 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 30 | 2278396 | 2278524 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 31 | 2826611 | 2826742 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 32 | 1682568 | 1682699 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 33 | 301114 | 301245 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 34 | 3111845 | 3111976 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 35 | 1412569 | 1412700 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 36 | 1205008 | 1205130 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 37 | 1191909 | 1192031 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 38 | 1164451 | 1164573 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 39 | 129554 | 129685 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 40 | 4847837 | 4847968 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 41 | 2914644 | 2914775 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 42 | 4323651 | 4323782 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 43 | 780531 | 780662 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 44 | 1112075 | 1112206 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 45 | 3096253 | 3096375 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 46 | 2812863 | 2812985 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 47 | 2879775 | 2879897 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 48 | 220106 | 220237 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 49 | 2138053 | 2138184 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 50 | 1137550 | 1137675 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 51 | 1383448 | 1383579 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 52 | 1209954 | 1210079 | - | NC_015576.1 | Mycolicibacter sinensis |
| 53 | 772883 | 773008 | + | NZ_AP022562.1 | Mycobacterium novum |
| 54 | 1159462 | 1159584 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 55 | 4016174 | 4016305 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 56 | 5207197 | 5207319 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 57 | 5206801 | 5206923 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 58 | 4138695 | 4138826 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 59 | 2940315 | 2940440 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 60 | 100559 | 100684 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 61 | 3945878 | 3946003 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 62 | 4472200 | 4472331 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 63 | 5489532 | 5489654 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 64 | 4466732 | 4466854 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 65 | 5693712 | 5693834 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 66 | 5694084 | 5694206 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 67 | 2652301 | 2652432 | - | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 68 | 1060432 | 1060563 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 69 | 4043629 | 4043754 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 70 | 3308663 | 3308794 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 71 | 1135402 | 1135524 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 72 | 4544440 | 4544562 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 73 | 2641132 | 2641254 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 74 | 862979 | 863101 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 75 | 1110594 | 1110722 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 76 | 418976 | 419101 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 77 | 1137529 | 1137654 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 78 | 1220294 | 1220419 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 79 | 1239136 | 1239261 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 80 | 1128492 | 1128617 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 81 | 1264434 | 1264559 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 82 | 1374966 | 1375091 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012150.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00378.22 | 0.81 | 65 | 3066 | same-strand | Enoyl-CoA hydratase/isomerase |
| 2 | PF02515.19 | 0.88 | 70 | 1871.0 | opposite-strand | CoA-transferase family III |
| 3 | PF00106.27 | 0.85 | 68 | 1079.0 | opposite-strand | short chain dehydrogenase |
| 4 | PF13561.8 | 0.85 | 68 | 1079.0 | opposite-strand | Enoyl-(Acyl carrier protein) reductase |
| 5 | PF08659.12 | 0.84 | 67 | 1079 | opposite-strand | KR domain |
| 6 | PF03176.17 | 0.76 | 61 | 365 | opposite-strand | MMPL family |
| 7 | PF13489.8 | 0.71 | 57 | 3265.5 | opposite-strand | Methyltransferase domain |
| 8 | PF08241.14 | 0.86 | 69 | 3282 | opposite-strand | Methyltransferase domain |
| 9 | PF13649.8 | 0.86 | 69 | 3282 | opposite-strand | Methyltransferase domain |
| 10 | PF08242.14 | 0.86 | 69 | 3282 | opposite-strand | Methyltransferase domain |
| 11 | PF02146.19 | 0.78 | 62 | 4017.5 | same-strand | Sir2 family |
++ More..