Result : EXP01831
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01831 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 5860943 |
| Right | 5861041 |
| Strand | + |
| Nucleotide Sequence | GTGGTGCTCTTCTTCGAGATCCTGCTTGTCGCGGCCGTGCTGGTCATCACGTGGTTCGCGGTGTACGCGCTGTACCGTCTGGTCACCGACGAGTCGTGA |
| Sequence | VVLFFEILLVAAVLVITWFAVYALYRLVTDES |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 32 |
++ More..
| Conservation Analysis |
No. of Species: 121
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3827985 | 3828083 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 2 | 4365499 | 4365597 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 3 | 4143510 | 4143608 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 4 | 895584 | 895682 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 5 | 160106 | 160204 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 6 | 2495549 | 2495647 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 7 | 5879063 | 5879161 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 8 | 5118856 | 5118954 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 9 | 1280036 | 1280134 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 10 | 854485 | 854583 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 11 | 720229 | 720327 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 12 | 683051 | 683149 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 13 | 645251 | 645349 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 14 | 355613 | 355711 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 15 | 3177638 | 3177736 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 16 | 2258674 | 2258772 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 17 | 1108971 | 1109069 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 18 | 3291638 | 3291736 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 19 | 2141782 | 2141880 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 20 | 2388556 | 2388654 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 21 | 5469057 | 5469155 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 22 | 3657422 | 3657520 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 23 | 3094014 | 3094112 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 24 | 2532774 | 2532872 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 25 | 6284690 | 6284788 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 26 | 705667 | 705765 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 27 | 4431855 | 4431953 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 28 | 2690621 | 2690719 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 29 | 691157 | 691255 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 30 | 3718215 | 3718313 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 31 | 3597548 | 3597646 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 32 | 5163374 | 5163472 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 33 | 4072042 | 4072140 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 34 | 646781 | 646879 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 35 | 3376352 | 3376450 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 36 | 1776385 | 1776483 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 37 | 4595406 | 4595504 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 38 | 569116 | 569214 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 39 | 5296778 | 5296876 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 40 | 659614 | 659712 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 41 | 4408900 | 4408998 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 42 | 4700366 | 4700464 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 43 | 3544123 | 3544221 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 44 | 2389469 | 2389567 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 45 | 3600285 | 3600383 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 46 | 3129430 | 3129528 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 47 | 732643 | 732741 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 48 | 639301 | 639399 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 49 | 5827922 | 5828020 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 50 | 2548476 | 2548574 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 51 | 4923358 | 4923456 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 52 | 3285796 | 3285894 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 53 | 4235669 | 4235767 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 54 | 1395078 | 1395176 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 55 | 49802 | 49897 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 56 | 665481 | 665579 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 57 | 656805 | 656903 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 58 | 2890047 | 2890145 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 59 | 3236310 | 3236408 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 60 | 1995795 | 1995893 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 61 | 2768064 | 2768174 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 62 | 850435 | 850533 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 63 | 3090673 | 3090783 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 64 | 1353090 | 1353188 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 65 | 306221 | 306334 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 66 | 5968465 | 5968563 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 67 | 723899 | 723997 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 68 | 5460668 | 5460766 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 69 | 1105656 | 1105754 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 70 | 4965033 | 4965131 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 71 | 5281365 | 5281463 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 72 | 915727 | 915825 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 73 | 908015 | 908113 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 74 | 5122153 | 5122251 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 75 | 5316166 | 5316264 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 76 | 2781265 | 2781363 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 77 | 974721 | 974819 | - | NZ_CP027433.1 | Gordonia iterans |
| 78 | 4638943 | 4639041 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 79 | 201590 | 201688 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 80 | 693392 | 693490 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 81 | 1817005 | 1817103 | - | NZ_CP027114.1 | Gordonia alkanivorans |
| 82 | 1136729 | 1136827 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 83 | 4864948 | 4865046 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 84 | 3752016 | 3752114 | + | NC_015576.1 | Mycolicibacter sinensis |
| 85 | 3713894 | 3713992 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 86 | 2733565 | 2733663 | - | NZ_AP022562.1 | Mycobacterium novum |
| 87 | 3077180 | 3077278 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 88 | 346231 | 346329 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 89 | 5456317 | 5456415 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 90 | 751793 | 751891 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 91 | 399193 | 399291 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 92 | 4714372 | 4714470 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 93 | 951084 | 951182 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 94 | 2098228 | 2098326 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 95 | 1982200 | 1982310 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 96 | 608174 | 608269 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 97 | 986134 | 986232 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 98 | 4629488 | 4629586 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 99 | 5031624 | 5031722 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 100 | 835367 | 835465 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 101 | 1037131 | 1037226 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 102 | 891553 | 891651 | - | NZ_CP015449.1 | Dietzia lutea |
| 103 | 1407832 | 1407927 | - | NZ_LR134352.1 | Nocardia asteroides |
| 104 | 5824649 | 5824744 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 105 | 646973 | 647068 | - | NZ_AP023396.1 | Nocardia wallacei |
| 106 | 2519402 | 2519500 | + | NZ_CP033972.1 | Gordonia insulae |
| 107 | 6268327 | 6268422 | + | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 108 | 778222 | 778326 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 109 | 9875955 | 9876053 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 110 | 5571419 | 5571517 | + | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 111 | 7417433 | 7417534 | + | NZ_AP017900.1 | Nocardia seriolae |
| 112 | 8573803 | 8573901 | + | NC_021252.1 | Amycolatopsis keratiniphila |
| 113 | 849206 | 849304 | - | NZ_CP015961.1 | Dietzia timorensis |
| 114 | 9535840 | 9535938 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 115 | 8582483 | 8582581 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 116 | 379439 | 379537 | - | NZ_CP016174.1 | Amycolatopsis orientalis |
| 117 | 415981 | 416088 | + | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 118 | 829241 | 829339 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 119 | 612839 | 612934 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 120 | 7855465 | 7855563 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
| 121 | 6860646 | 6860744 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 122 | 7969777 | 7969875 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 123 | 6852506 | 6852604 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 124 | 6348893 | 6348991 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 125 | 3435031 | 3435138 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR026975.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF11209.10 | 0.83 | 101 | 2370 | same-strand | LmeA-like phospholipid-binding |
| 2 | PF14340.8 | 0.76 | 92 | 1264.0 | same-strand | Domain of unknown function (DUF4395) |
| 3 | PF00581.22 | 0.9 | 109 | 410 | same-strand | Rhodanese-like domain |
| 4 | PF07210.14 | 0.9 | 109 | 101 | same-strand | Protein of unknown function (DUF1416) |
| 5 | PF08768.13 | 1.0 | 121 | -3 | same-strand | THAP4-like, heme-binding beta-barrel domain |
| 6 | PF01063.21 | 0.69 | 83 | 1469 | opposite-strand | Amino-transferase class IV |
++ More..