* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00436.27
|
0.6
|
3
|
4877
|
opposite-strand
|
Single-strand binding protein family
|
2
|
PF01250.19
|
0.6
|
3
|
4514
|
opposite-strand
|
Ribosomal protein S6
|
3
|
PF09594.12
|
0.8
|
4
|
2083.0
|
opposite-strand
|
Glycosyltransferase family 87
|
4
|
PF00912.24
|
0.8
|
4
|
-84.5
|
opposite-strand
|
Transglycosylase
|
5
|
PF00905.24
|
0.8
|
4
|
-84.5
|
opposite-strand
|
Penicillin binding protein transpeptidase domain
|
6
|
PF17249.4
|
0.8
|
4
|
334.0
|
opposite-strand
|
Family of unknown function (DUF5318)
|
7
|
PF08044.13
|
0.8
|
4
|
965.0
|
same-strand
|
Domain of unknown function (DUF1707)
|
8
|
PF03551.16
|
0.8
|
4
|
1858.0
|
same-strand
|
Transcriptional regulator PadR-like family
|
9
|
PF10400.11
|
0.8
|
4
|
1858.0
|
same-strand
|
Virulence activator alpha C-term
|
10
|
PF01658.19
|
0.6
|
3
|
2455
|
same-strand
|
Myo-inositol-1-phosphate synthase
|
++ More..