* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012150.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04542.16
|
1.0
|
2
|
2693.5
|
opposite-strand
|
Sigma-70 region 2
|
2
|
PF08281.14
|
1.0
|
2
|
2693.5
|
opposite-strand
|
Sigma-70, region 4
|
3
|
PF04545.18
|
1.0
|
2
|
2693.5
|
opposite-strand
|
Sigma-70, region 4
|
4
|
PF00687.23
|
1.0
|
2
|
1910.0
|
same-strand
|
Ribosomal protein L1p/L10e family
|
5
|
PF03946.16
|
1.0
|
2
|
1381.5
|
same-strand
|
Ribosomal protein L11, N-terminal domain
|
6
|
PF00298.21
|
1.0
|
2
|
1381.5
|
same-strand
|
Ribosomal protein L11, RNA binding domain
|
7
|
PF02357.21
|
1.0
|
2
|
461.0
|
same-strand
|
Transcription termination factor nusG
|
8
|
PF00584.22
|
1.0
|
2
|
-3.0
|
same-strand
|
SecE/Sec61-gamma subunits of protein translocation complex
|
9
|
PF13452.8
|
1.0
|
2
|
735.5
|
same-strand
|
N-terminal half of MaoC dehydratase
|
10
|
PF01575.21
|
1.0
|
2
|
788.5
|
same-strand
|
MaoC like domain
|
11
|
PF00471.22
|
1.0
|
2
|
1690.5
|
same-strand
|
Ribosomal protein L33
|
12
|
PF00042.24
|
1.0
|
2
|
2199.0
|
same-strand
|
Globin
|
13
|
PF00175.23
|
1.0
|
2
|
2199.0
|
same-strand
|
Oxidoreductase NAD-binding domain
|
14
|
PF11563.10
|
1.0
|
2
|
2199.0
|
same-strand
|
Protoglobin
|
++ More..