* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF12705.9
|
1.0
|
2
|
4526
|
same-strand
|
PD-(D/E)XK nuclease superfamily
|
2
|
PF00580.23
|
1.0
|
2
|
3145.0
|
same-strand
|
UvrD/REP helicase N-terminal domain
|
3
|
PF13245.8
|
1.0
|
2
|
3145.0
|
same-strand
|
AAA domain
|
4
|
PF13361.8
|
1.0
|
2
|
3145.0
|
same-strand
|
UvrD-like helicase C-terminal domain
|
5
|
PF01988.21
|
1.0
|
2
|
513.0
|
opposite-strand
|
VIT family
|
6
|
PF02254.20
|
1.0
|
2
|
-7.0
|
same-strand
|
TrkA-N domain
|
7
|
PF07885.18
|
1.0
|
2
|
-7.0
|
same-strand
|
Ion channel
|
8
|
PF00293.30
|
1.0
|
2
|
1084.0
|
same-strand
|
NUDIX domain
|
9
|
PF09297.13
|
1.0
|
2
|
1084.0
|
same-strand
|
NADH pyrophosphatase zinc ribbon domain
|
10
|
PF00462.26
|
1.0
|
2
|
2041.0
|
opposite-strand
|
Glutaredoxin
|
++ More..