* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF05721.15
|
1.0
|
2
|
4901.0
|
opposite-strand
|
Phytanoyl-CoA dioxygenase (PhyH)
|
2
|
PF06339.14
|
1.0
|
2
|
4488.0
|
opposite-strand
|
Ectoine synthase
|
3
|
PF07883.13
|
1.0
|
2
|
4488.0
|
opposite-strand
|
Cupin domain
|
4
|
PF00202.23
|
1.0
|
2
|
3190.0
|
opposite-strand
|
Aminotransferase class-III
|
5
|
PF00004.31
|
1.0
|
2
|
69.0
|
opposite-strand
|
ATPase family associated with various cellular activities (AAA)
|
6
|
PF17758.3
|
1.0
|
2
|
69.0
|
opposite-strand
|
Proteasomal ATPase OB N-terminal domain
|
7
|
PF16450.7
|
1.0
|
2
|
69.0
|
opposite-strand
|
Proteasomal ATPase OB C-terminal domain
|
8
|
PF04456.14
|
1.0
|
2
|
1098.0
|
same-strand
|
Protein of unknown function (DUF503)
|
9
|
PF12705.9
|
1.0
|
2
|
2329.0
|
same-strand
|
PD-(D/E)XK nuclease superfamily
|
++ More..