Result : A0QST8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Redox-responsive transcriptional regulator WhiB3 |
| NCBI Accession ID | AF073300.1 |
| Organism | Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) |
| Left | 748 |
| Right | 1038 |
| Strand | + |
| Nucleotide Sequence | ATGCCGCAGCCGCAGCAACTACCCGGTCCGAATGCGGACATCTGGGATTGGCAGATGCGAGGACTTTGCCGTGGCGTCGACTCGTCGATGTTCTTCCACCCGGACGGCGAGCGTGGACGTGCACGGGCCCAGCGTGAGATGCGTGCGAAGGAAATGTGTCGCAGTTGCCCGGTGATCGCGCAGTGCCGCTCGCACGCGCTGGCAGTGGGCGAGCCGTACGGCATTTGGGGCGGTCTCAGCGAATCCGAGCGTGAGCTTCTGCTCAAGCGCGGAATTCGCCGCAGCGCCTAG |
| Sequence | MPQPQQLPGPNADIWDWQMRGLCRGVDSSMFFHPDGERGRARAQREMRAKEMCRSCPVIAQCRSHALAVGEPYGIWGGLSESERELLLKRGIRRSA |
| Source of smORF | Swiss-Prot |
| Function | A redox-sensitive transcriptional regulator. Maintains intracellular redox homeostasis by regulating catabolic metabolism and polyketide biosynthesis. Regulates expression of the redox buffer ergothioneine (ERG). In concert with myothiol (MSH), another redox buffer, responds to low pH leading to acid resistance. The apo- but not holo-form probably binds DNA (By similarity). {ECO:0000250}. |
| Pubmed ID | 10422690 17295914 18955433 |
| Domain | CDD:396843 |
| Functional Category | DNA-binding_and_Metal-binding |
| Uniprot ID | A0QST8 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 305
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1756066 | 1756356 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 698081 | 698413 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 3 | 6627437 | 6627727 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 4 | 6233087 | 6233377 | + | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 5 | 231381 | 231653 | + | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 6 | 1649762 | 1650052 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 7 | 2318841 | 2319131 | + | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 8 | 3617764 | 3618054 | + | NZ_AP022617.1 | Mycolicibacterium monacense |
| 9 | 2494755 | 2495045 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 10 | 3634576 | 3634875 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 11 | 545885 | 546175 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 12 | 4585914 | 4586204 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 13 | 737947 | 738237 | - | NZ_AP022605.1 | Mycobacterium doricum |
| 14 | 3412913 | 3413203 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 15 | 1156410 | 1156700 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 16 | 2348389 | 2348679 | + | NZ_AP022565.1 | Mycolicibacterium alvei |
| 17 | 3412075 | 3412365 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 18 | 1289163 | 1289453 | - | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 19 | 5410230 | 5410520 | + | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 20 | 3171960 | 3172250 | + | NZ_AP022586.1 | Mycolicibacterium litorale |
| 21 | 3662505 | 3662795 | - | NZ_AP022596.1 | Mycolicibacterium helvum |
| 22 | 5669305 | 5669595 | - | NZ_AP022601.1 | Mycobacterium gallinarum |
| 23 | 3849229 | 3849519 | + | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 24 | 5669081 | 5669371 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 25 | 4433707 | 4434006 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 26 | 5347833 | 5348123 | - | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 27 | 602620 | 602868 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 28 | 5372675 | 5372965 | + | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 29 | 1813785 | 1814075 | - | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 30 | 140641 | 140931 | + | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 31 | 1243347 | 1243637 | - | NZ_LR134356.1 | Mycolicibacterium aurum |
| 32 | 1593132 | 1593422 | - | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 33 | 3845694 | 3845984 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 34 | 4380334 | 4380618 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 35 | 4289230 | 4289490 | + | NZ_LR134355.1 | Mycolicibacterium chitae |
| 36 | 2707369 | 2707659 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 37 | 1314581 | 1314871 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 38 | 3553106 | 3553396 | + | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 39 | 3489656 | 3489946 | + | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 40 | 3842334 | 3842624 | + | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 41 | 3821211 | 3821501 | + | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 42 | 4527008 | 4527298 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 43 | 2571040 | 2571330 | - | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 44 | 5189354 | 5189644 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 45 | 3789921 | 3790211 | + | NZ_CP014955.1 | Mycobacteroides abscessus |
| 46 | 2030886 | 2031176 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 47 | 4256180 | 4256470 | + | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 48 | 411151 | 411441 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 49 | 1534833 | 1535123 | - | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 50 | 1383724 | 1384032 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 51 | 2775046 | 2775354 | - | NZ_CP058277.1 | Mycobacterium marinum |
| 52 | 1128976 | 1129269 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 53 | 5106418 | 5106726 | - | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 54 | 3242991 | 3243299 | + | NZ_AP022614.1 | Mycobacterium parmense |
| 55 | 200690 | 200983 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 56 | 2644965 | 2645264 | + | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 57 | 2838066 | 2838374 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 58 | 4624157 | 4624465 | - | NZ_AP022569.1 | Mycobacterium cookii |
| 59 | 5297543 | 5297851 | - | NZ_AP022582.1 | Mycobacterium seoulense |
| 60 | 2113049 | 2113339 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 61 | 4456779 | 4457081 | + | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 62 | 4589687 | 4589989 | + | NC_016948.1 | Mycobacterium paraintracellulare |
| 63 | 1076264 | 1076572 | - | NZ_AP018164.1 | Mycobacterium shigaense |
| 64 | 2500810 | 2501118 | + | NZ_AP022576.1 | Mycobacterium florentinum |
| 65 | 4291883 | 4292191 | + | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 66 | 4870574 | 4870882 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 67 | 4352925 | 4353227 | + | NZ_CP023147.1 | Mycobacterium marseillense |
| 68 | 1333038 | 1333346 | - | NZ_CP025546.1 | Mycobacterium paragordonae |
| 69 | 4420949 | 4421257 | - | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 70 | 1084848 | 1085156 | - | NZ_LR130759.1 | Mycobacterium basiliense |
| 71 | 1123444 | 1123740 | + | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 72 | 2831018 | 2831314 | - | NZ_AP022583.1 | Mycobacterium noviomagense |
| 73 | 3362039 | 3362347 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 74 | 3594949 | 3595257 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 75 | 2820227 | 2820535 | + | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 76 | 746743 | 747039 | - | NZ_AP022613.1 | Mycobacterium conspicuum |
| 77 | 3894918 | 3895217 | + | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 78 | 2915239 | 2915547 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 79 | 454090 | 454398 | + | NZ_AP022606.1 | Mycobacterium branderi |
| 80 | 1595955 | 1596254 | + | NZ_AP022568.1 | Mycobacterium simiae |
| 81 | 859399 | 859707 | - | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 82 | 2919419 | 2919712 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 83 | 3909587 | 3909877 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 84 | 4550811 | 4551110 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 85 | 3834892 | 3835200 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 86 | 3902149 | 3902457 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 87 | 460663 | 460971 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 88 | 3521941 | 3522234 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 89 | 2038782 | 2039021 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 90 | 3283814 | 3284110 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 91 | 991691 | 991984 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 92 | 2041478 | 2041774 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 93 | 4699083 | 4699382 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 94 | 1327870 | 1328181 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 95 | 3728685 | 3728978 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 96 | 4749279 | 4749518 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 97 | 516435 | 516728 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 98 | 4066954 | 4067247 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 99 | 4924713 | 4924952 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 100 | 976164 | 976457 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 101 | 5394043 | 5394336 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 102 | 6879349 | 6879642 | + | NZ_AP023396.1 | Nocardia wallacei |
| 103 | 1813782 | 1814075 | - | NZ_LR134352.1 | Nocardia asteroides |
| 104 | 989441 | 989731 | + | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 105 | 4095144 | 4095437 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 106 | 3208968 | 3209207 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 107 | 5815458 | 5815751 | + | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 108 | 1275928 | 1276221 | - | NZ_AP017900.1 | Nocardia seriolae |
| 109 | 487939 | 488244 | - | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 110 | 1664579 | 1664875 | + | NZ_CP033972.1 | Gordonia insulae |
| 111 | 4253330 | 4253626 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 112 | 4265984 | 4266286 | + | NZ_CP045929.1 | Saccharopolyspora coralli |
| 113 | 3268022 | 3268297 | + | NZ_CP045929.1 | Saccharopolyspora coralli |
| 114 | 920956 | 921252 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 115 | 1795830 | 1796126 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 116 | 3044811 | 3045098 | - | NZ_AP022562.1 | Mycobacterium novum |
| 117 | 1822083 | 1822379 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 118 | 4383356 | 4383652 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 119 | 3436436 | 3436723 | + | NC_015576.1 | Mycolicibacter sinensis |
| 120 | 945278 | 945568 | + | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 121 | 2772990 | 2773295 | + | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 122 | 1243140 | 1243430 | + | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 123 | 7214278 | 7214583 | - | NZ_CP031142.1 | Saccharopolyspora pogona |
| 124 | 8864443 | 8864709 | - | NZ_CP031142.1 | Saccharopolyspora pogona |
| 125 | 2781688 | 2781978 | + | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 126 | 709348 | 709653 | - | NZ_LS483459.1 | Corynebacterium jeikeium |
| 127 | 433193 | 433510 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 128 | 2167307 | 2167630 | + | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 129 | 3407911 | 3408201 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 130 | 621278 | 621577 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 131 | 7520010 | 7520312 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 132 | 6280857 | 6281141 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 133 | 538185 | 538487 | - | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 134 | 421828 | 422145 | - | NZ_CP026948.1 | Corynebacterium liangguodongii |
| 135 | 2149100 | 2149417 | + | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 136 | 6072657 | 6072959 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 137 | 5032180 | 5032488 | - | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 138 | 6574784 | 6575086 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 139 | 5537663 | 5537962 | - | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 140 | 2051986 | 2052276 | - | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 141 | 4459517 | 4459819 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 142 | 441952 | 442293 | - | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 143 | 468429 | 468728 | - | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 144 | 434858 | 435151 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 145 | 1593734 | 1594054 | + | NZ_CP032788.1 | Corynebacterium xerosis |
| 146 | 601639 | 601938 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 147 | 541590 | 541901 | - | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 148 | 638189 | 638488 | - | NZ_CP015622.1 | Corynebacterium crudilactis |
| 149 | 792402 | 792701 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 150 | 1638791 | 1639093 | + | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 151 | 640856 | 641155 | - | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 152 | 631129 | 631428 | - | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 153 | 2194409 | 2194732 | - | NZ_CP068168.1 | Corynebacterium amycolatum |
| 154 | 609028 | 609327 | - | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 155 | 624538 | 624837 | - | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 156 | 1324536 | 1324775 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 157 | 492160 | 492465 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 158 | 7315625 | 7315927 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 159 | 8208444 | 8208737 | + | NZ_CP015163.1 | Amycolatopsis albispora |
| 160 | 3792268 | 3792570 | + | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 161 | 1063916 | 1064206 | + | NZ_CP014635.1 | Corynebacterium simulans |
| 162 | 1817595 | 1817900 | + | NZ_CP046883.1 | Corynebacterium anserum |
| 163 | 545915 | 546232 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 164 | 493963 | 494253 | - | NZ_CP008944.1 | Corynebacterium atypicum |
| 165 | 510577 | 510876 | - | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 166 | 11025695 | 11025997 | + | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 167 | 3273000 | 3273308 | + | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 168 | 5825834 | 5826094 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 169 | 537991 | 538290 | - | NZ_CP010827.1 | Corynebacterium singulare |
| 170 | 9160289 | 9160588 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 171 | 7172243 | 7172548 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 172 | 5309820 | 5310119 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 173 | 1347449 | 1347739 | - | NZ_LS483464.1 | Corynebacterium renale |
| 174 | 2240821 | 2241120 | + | NZ_LS483460.1 | Corynebacterium minutissimum |
| 175 | 2187312 | 2187614 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 176 | 2846360 | 2846668 | - | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 177 | 357756 | 358067 | - | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 178 | 444573 | 444884 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 179 | 6532411 | 6532725 | - | NZ_CP065050.1 | Streptomyces solisilvae |
| 180 | 3508084 | 3508410 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 181 | 7764941 | 7765246 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 182 | 580257 | 580559 | - | NC_016109.1 | Kitasatospora setae KM-6054 |
| 183 | 7566532 | 7566852 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 184 | 4516305 | 4516631 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 185 | 7259609 | 7259902 | + | NZ_CP023698.1 | Streptomyces viridifaciens |
| 186 | 536507 | 536803 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 187 | 579130 | 579426 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 188 | 4673200 | 4673529 | - | NZ_CP023407.1 | Streptomyces fungicidicus |
| 189 | 5257275 | 5257607 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 190 | 4717287 | 4717628 | - | NZ_CP024957.1 | Streptomyces cavourensis |
| 191 | 4613358 | 4613690 | - | NZ_CP023693.1 | Streptomyces cinereoruber |
| 192 | 7308501 | 7308782 | - | NZ_CP023693.1 | Streptomyces cinereoruber |
| 193 | 3729938 | 3730261 | - | NZ_CP032229.1 | Streptomyces seoulensis |
| 194 | 4830264 | 4830590 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 195 | 7491359 | 7491610 | - | NZ_CP023703.1 | Streptomyces galilaeus |
| 196 | 3975655 | 3975984 | + | NZ_CP045643.1 | Streptomyces fagopyri |
| 197 | 3600182 | 3600511 | + | NZ_CP034687.1 | Streptomyces griseoviridis |
| 198 | 3872097 | 3872423 | + | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 199 | 6127343 | 6127672 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 200 | 6657067 | 6657402 | - | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 201 | 4100941 | 4101276 | + | NC_013929.1 | Streptomyces scabiei 87.22 |
| 202 | 6384126 | 6384458 | - | NZ_CP034463.1 | Streptomyces aquilus |
| 203 | 4803937 | 4804266 | - | NZ_CP063374.1 | Streptomyces chromofuscus |
| 204 | 4524262 | 4524591 | - | NZ_CP029043.1 | Streptomyces nigra |
| 205 | 6046179 | 6046508 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 206 | 4038565 | 4038894 | + | NZ_CP023689.1 | Streptomyces chartreusis |
| 207 | 9098315 | 9098644 | + | NZ_CP063373.1 | Streptomyces ferrugineus |
| 208 | 6134634 | 6134963 | - | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 209 | 3249586 | 3249906 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 210 | 2873309 | 2873638 | + | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 211 | 879203 | 879532 | - | NZ_CP051486.1 | Streptomyces pratensis |
| 212 | 3272319 | 3272648 | + | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 213 | 4390619 | 4390948 | - | NZ_CP022310.1 | Streptomyces calvus |
| 214 | 4841936 | 4842268 | - | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 215 | 3430882 | 3431214 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 216 | 3826227 | 3826559 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 217 | 4163434 | 4163775 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 218 | 3917074 | 3917406 | + | NZ_CP023691.1 | Streptomyces platensis |
| 219 | 5060771 | 5061112 | - | NZ_CP020563.1 | Kitasatospora albolonga |
| 220 | 4586915 | 4587226 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 221 | 4910758 | 4911099 | - | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 222 | 4721625 | 4721954 | - | NZ_CP023695.1 | Streptomyces alboniger |
| 223 | 3535007 | 3535336 | + | NZ_CP032698.1 | Streptomyces hundungensis |
| 224 | 3503789 | 3504118 | + | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 225 | 2921327 | 2921647 | + | NZ_CP034279.1 | Streptomyces ficellus |
| 226 | 3961803 | 3962117 | - | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 227 | 4123739 | 4124053 | - | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 228 | 4343331 | 4343654 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 229 | 4942198 | 4942533 | - | NZ_CP070242.1 | Streptomyces californicus |
| 230 | 5002164 | 5002499 | - | NZ_CP020570.1 | Streptomyces violaceoruber |
| 231 | 4434047 | 4434376 | - | NZ_CP021080.1 | Streptomyces pluripotens |
| 232 | 5133777 | 5134106 | - | NC_021985.1 | Streptomyces collinus Tu 365 |
| 233 | 3516112 | 3516441 | + | NZ_CP026652.1 | Streptomyces dengpaensis |
| 234 | 3611740 | 3612069 | + | NZ_CP051006.1 | Streptomyces griseofuscus |
| 235 | 5257380 | 5257709 | - | NZ_CP071839.1 | Streptomyces cyanogenus |
| 236 | 5688820 | 5689149 | - | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 237 | 4167482 | 4167811 | + | NZ_CP017248.1 | Streptomyces fodineus |
| 238 | 5675813 | 5676142 | - | NZ_CP047020.1 | Streptomyces broussonetiae |
| 239 | 948685 | 949011 | - | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 240 | 5023563 | 5023904 | - | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 241 | 4396295 | 4396633 | - | NZ_CP015866.1 | Streptomyces parvulus |
| 242 | 5768015 | 5768341 | - | NZ_CP023690.1 | Streptomyces spectabilis |
| 243 | 4125723 | 4126049 | + | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 244 | 3915957 | 3916286 | + | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 245 | 5444389 | 5444724 | - | NZ_CP027306.1 | Streptomyces atratus |
| 246 | 4601345 | 4601674 | - | NZ_AP023439.1 | Streptomyces tuirus |
| 247 | 5304176 | 5304505 | - | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 248 | 5499879 | 5500208 | - | NZ_CP015098.1 | Streptomyces qaidamensis |
| 249 | 3744078 | 3744404 | + | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 250 | 3570358 | 3570675 | - | NZ_CP009922.3 | Streptomyces xiamenensis |
| 251 | 3673998 | 3674321 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 252 | 4800162 | 4800497 | - | NZ_CP031194.1 | Streptomyces paludis |
| 253 | 545161 | 545457 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 254 | 5642106 | 5642429 | - | NZ_CP022685.1 | Streptomyces formicae |
| 255 | 4663735 | 4664064 | - | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 256 | 3422978 | 3423292 | + | NZ_CP060404.1 | Streptomyces buecherae |
| 257 | 2673583 | 2673909 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 258 | 3221662 | 3221967 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 259 | 4101295 | 4101618 | - | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 260 | 3741711 | 3742028 | - | NZ_CP054938.1 | Streptomyces harbinensis |
| 261 | 2503667 | 2503939 | - | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 262 | 347820 | 348083 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 263 | 6377686 | 6377985 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 264 | 7685188 | 7685484 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 265 | 1997398 | 1997685 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 266 | 6297255 | 6297554 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
| 267 | 7526233 | 7526529 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
| 268 | 2012479 | 2012766 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 269 | 1382575 | 1382874 | - | NZ_CP027433.1 | Gordonia iterans |
| 270 | 4103050 | 4103343 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 271 | 1328394 | 1328678 | - | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 272 | 1979260 | 1979559 | + | NZ_CP016353.1 | Prauserella marina |
| 273 | 703134 | 703436 | - | NZ_CP016353.1 | Prauserella marina |
| 274 | 7770220 | 7770507 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 275 | 10329895 | 10330191 | + | NZ_CP034550.1 | Saccharothrix syringae |
| 276 | 2557256 | 2557537 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 277 | 8886200 | 8886463 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 278 | 1327429 | 1327725 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 279 | 460027 | 460329 | - | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 280 | 419266 | 419547 | - | NZ_CP011311.1 | Corynebacterium camporealensis |
| 281 | 1126661 | 1126972 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 282 | 1577197 | 1577490 | + | NZ_LR134357.1 | Actinomyces israelii |
| 283 | 5727543 | 5727803 | + | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 284 | 1597746 | 1598039 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 285 | 5140481 | 5140777 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 286 | 3569120 | 3569416 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 287 | 6857456 | 6857743 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 288 | 6161746 | 6162024 | + | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 289 | 1486004 | 1486297 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 290 | 829711 | 830013 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 291 | 306015 | 306323 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 292 | 8595682 | 8595984 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 293 | 1325977 | 1326282 | - | NZ_LR134363.1 | Actinomyces slackii |
| 294 | 4571674 | 4572006 | + | NZ_CP070326.1 | Streptomyces noursei |
| 295 | 8686123 | 8686419 | + | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 296 | 2781844 | 2782131 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 297 | 7683815 | 7684117 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 298 | 551925 | 552212 | - | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 299 | 769798 | 770100 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 300 | 2772909 | 2773220 | + | NZ_CP048882.1 | Streptomyces bathyalis |
| 301 | 660854 | 661180 | - | NZ_CP030862.1 | Streptomyces globosus |
| 302 | 5476476 | 5476802 | - | NZ_CP071139.1 | Streptomyces nojiriensis |
| 303 | 628146 | 628427 | - | NZ_CP071139.1 | Streptomyces nojiriensis |
| 304 | 3170021 | 3170347 | + | NZ_CP023701.1 | Streptomyces subrutilus |
| 305 | 722262 | 722546 | + | NZ_CP023701.1 | Streptomyces subrutilus |
| 306 | 3076782 | 3077108 | + | NZ_CP023692.1 | Streptomyces vinaceus |
| 307 | 789732 | 790025 | - | NZ_LT906453.1 | Dermatophilus congolensis |
| 308 | 434216 | 434497 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 309 | 3383408 | 3383695 | - | NZ_CP044548.2 | Janibacter melonis |
| 310 | 1973523 | 1973804 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 311 | 2376937 | 2377218 | + | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 312 | 3409376 | 3409666 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 313 | 4684872 | 4685171 | + | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 314 | 2322359 | 2322631 | + | NZ_CP040887.1 | Serinicoccus chungangensis |
| 315 | 633459 | 633749 | - | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 316 | 486332 | 486616 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 317 | 1845622 | 1845903 | + | NZ_CP033897.1 | Corynebacterium gerontici |
| 318 | 1551695 | 1551997 | + | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 319 | 2174160 | 2174462 | + | NZ_CP025227.1 | Actinomyces wuliandei |
| 320 | 2656757 | 2657014 | + | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 321 | 3572491 | 3572784 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 322 | 3333447 | 3333722 | - | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 323 | 42914 | 43201 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 324 | 1253147 | 1253449 | + | NZ_LR134350.1 | Actinomyces howellii |
| 325 | 46269 | 46556 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 326 | 1249495 | 1249779 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 327 | 1750711 | 1751004 | - | NZ_CP014228.1 | Actinomyces radicidentis |
| 328 | 998893 | 999195 | - | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 329 | 3468565 | 3468861 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 330 | 2345923 | 2346201 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 331 | 463682 | 463975 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 332 | 2774039 | 2774296 | - | NC_013729.1 | Kribbella flavida DSM 17836 |
| 333 | 7049221 | 7049478 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 334 | 1707337 | 1707627 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 335 | 3922985 | 3923290 | - | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 336 | 736215 | 736496 | - | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 337 | 1675861 | 1676151 | + | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 338 | 1991817 | 1992119 | + | NZ_CP066060.1 | Actinomyces oris |
| 339 | 3550914 | 3551195 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 340 | 1200863 | 1201195 | - | NC_008278.1 | Frankia alni ACN14a |
| 341 | 3061729 | 3062031 | + | NZ_CP066049.1 | Actinomyces naeslundii |
| 342 | 757438 | 757728 | - | NC_015588.1 | Isoptericola variabilis 225 |
| 343 | 20045 | 20347 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 344 | 3476320 | 3476622 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 345 | 394251 | 394538 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 346 | 1923788 | 1924078 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 347 | 2809272 | 2809562 | + | NZ_CP033325.1 | Georgenia faecalis |
| 348 | 1935331 | 1935621 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 349 | 1763899 | 1764192 | - | NZ_LT635457.1 | Actinomyces pacaensis |
| 350 | 2502775 | 2503077 | + | NZ_CP013290.1 | Janibacter indicus |
| 351 | 2753916 | 2754212 | + | NZ_CP051884.1 | Cellulomonas taurus |
| 352 | 960367 | 960675 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 353 | 1162042 | 1162338 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 354 | 1014247 | 1014543 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 355 | 2901784 | 2902086 | + | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 356 | 3208502 | 3208807 | + | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 357 | 3411860 | 3412159 | + | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 358 | 15645 | 15938 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 359 | 1511568 | 1511864 | + | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 360 | 742520 | 742816 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 361 | 932422 | 932697 | + | NZ_CP007519.1 | Trueperella pyogenes |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011269.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF08281.14 | 0.84 | 256 | 1300 | opposite-strand | Sigma-70, region 4 |
| 2 | PF04545.18 | 0.84 | 255 | 1312.5 | opposite-strand | Sigma-70, region 4 |
| 3 | PF00478.27 | 0.88 | 268 | 2433 | opposite-strand | IMP dehydrogenase / GMP reductase domain |
| 4 | PF00571.30 | 0.87 | 266 | 2411 | opposite-strand | CBS domain |
| 5 | PF04542.16 | 0.76 | 233 | 1285 | opposite-strand | Sigma-70 region 2 |
++ More..