Result : EXP01803
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01803 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 5806079 |
| Right | 5806132 |
| Strand | + |
| Nucleotide Sequence | ATGGTGGCGATCAGGTCGGCGCCGATACCCTGCGGCACGAAACCGATGCGGTAG |
| Sequence | MVAIRSAPIPCGTKPMR |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 17 |
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| Conservation Analysis |
No. of Species: 44
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5821220 | 5821273 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 5322791 | 5322844 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 3 | 3665705 | 3665758 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 4 | 1196884 | 1196937 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 5 | 6210811 | 6210864 | + | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 6 | 2565383 | 2565436 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 7 | 2308310 | 2308363 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 8 | 1169552 | 1169605 | - | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 9 | 15486 | 15539 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 10 | 6249829 | 6249879 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 11 | 5111729 | 5111782 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 12 | 688776 | 688829 | - | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 13 | 4121496 | 4121549 | - | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 14 | 2426914 | 2426967 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 15 | 3099632 | 3099685 | + | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 16 | 1820491 | 1820544 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 17 | 4638757 | 4638810 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 18 | 353944 | 353997 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 19 | 2547086 | 2547139 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 20 | 2463902 | 2463955 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 21 | 3229718 | 3229771 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 22 | 5861383 | 5861433 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 23 | 5449174 | 5449227 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 24 | 5417629 | 5417679 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 25 | 3388417 | 3388470 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 26 | 2648181 | 2648234 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 27 | 3537590 | 3537643 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 28 | 4495132 | 4495185 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 29 | 5056036 | 5056086 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 30 | 5310042 | 5310095 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 31 | 5436424 | 5436477 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 32 | 3453788 | 3453841 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 33 | 849412 | 849465 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 34 | 835598 | 835651 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 35 | 825226 | 825279 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 36 | 784562 | 784615 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 37 | 4747937 | 4747987 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 38 | 838657 | 838707 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 39 | 847284 | 847337 | - | NC_015576.1 | Mycolicibacter sinensis |
| 40 | 1139082 | 1139135 | + | NZ_AP022562.1 | Mycobacterium novum |
| 41 | 4880665 | 4880718 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 42 | 3215022 | 3215075 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 43 | 5487658 | 5487711 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 44 | 6060931 | 6060984 | + | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 45 | 941606 | 941656 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02737.20 | 1.0 | 44 | 751.0 | opposite-strand | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
| 2 | PF00725.24 | 1.0 | 44 | 751.0 | opposite-strand | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
| 3 | PF02803.20 | 1.0 | 44 | -53.0 | opposite-strand | Thiolase, C-terminal domain |
| 4 | PF00108.25 | 1.0 | 44 | -53.0 | opposite-strand | Thiolase, N-terminal domain |
| 5 | PF00155.23 | 0.7 | 31 | 1698 | same-strand | Aminotransferase class I and II |
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