Result : EXP01791
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01791 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 772378 |
| Right | 772419 |
| Strand | + |
| Nucleotide Sequence | GTGCCGCCGGCCAGCGAGGTCGACGCCGTCCACAGCGGGTAG |
| Sequence | VPPASEVDAVHSG |
| Source of smORF | Transcriptional-level |
| Function | |
| Pubmed ID | 32181921 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 13 |
++ More..
| Conservation Analysis |
No. of Species: 73
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 809020 | 809061 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 3793163 | 3793204 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 3 | 6171144 | 6171185 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 4 | 561420 | 561461 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 5 | 4750142 | 4750183 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 6 | 4087623 | 4087664 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 7 | 329669 | 329710 | + | NZ_LT906469.1 | Mycolicibacter terrae |
| 8 | 410422 | 410463 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 9 | 402663 | 402704 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 10 | 414595 | 414636 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 11 | 2907400 | 2907441 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 12 | 6766541 | 6766582 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 13 | 5020406 | 5020447 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 14 | 5157458 | 5157499 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 15 | 1184601 | 1184642 | + | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 16 | 2420733 | 2420774 | + | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 17 | 3687075 | 3687116 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 18 | 4047580 | 4047621 | - | NZ_CP019343.1 | Oceanicoccus sagamiensis |
| 19 | 1848871 | 1848912 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 20 | 4583849 | 4583890 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 21 | 4317611 | 4317652 | - | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 22 | 1006548 | 1006589 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 23 | 4789223 | 4789264 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 24 | 5051566 | 5051607 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 25 | 1899849 | 1899890 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 26 | 4925889 | 4925930 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 27 | 3977866 | 3977907 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 28 | 4789112 | 4789153 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 29 | 3440264 | 3440305 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 30 | 1612230 | 1612271 | - | NZ_AP022562.1 | Mycobacterium novum |
| 31 | 1425627 | 1425668 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 32 | 4764076 | 4764117 | + | NZ_AP022608.1 | Mycolicibacterium gadium |
| 33 | 1591193 | 1591234 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 34 | 405843 | 405884 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 35 | 2055383 | 2055424 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 36 | 4945897 | 4945938 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 37 | 380512 | 380553 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 38 | 192059 | 192100 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 39 | 661987 | 662028 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 40 | 933719 | 933760 | - | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 41 | 437049 | 437090 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 42 | 4479358 | 4479399 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 43 | 729402 | 729443 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 44 | 2032748 | 2032789 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 45 | 784923 | 784964 | - | NZ_CP061539.1 | Rothia terrae |
| 46 | 3084090 | 3084131 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 47 | 3396252 | 3396293 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 48 | 2278189 | 2278230 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 49 | 776223 | 776264 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 50 | 2146118 | 2146159 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 51 | 781199 | 781240 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 52 | 2199857 | 2199898 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 53 | 6044860 | 6044901 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 54 | 3936991 | 3937032 | + | NZ_CP054938.1 | Streptomyces harbinensis |
| 55 | 556925 | 556966 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 56 | 480519 | 480560 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 57 | 4402577 | 4402618 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 58 | 464915 | 464956 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 59 | 3859689 | 3859730 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 60 | 190033 | 190074 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 61 | 5264601 | 5264642 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 62 | 3323306 | 3323347 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 63 | 3063990 | 3064031 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 64 | 4891519 | 4891560 | + | NZ_CP031742.1 | Streptomyces koyangensis |
| 65 | 4142773 | 4142814 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 66 | 3856209 | 3856250 | - | NZ_AP022590.1 | Mycobacterium mantenii |
| 67 | 467847 | 467888 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 68 | 4937697 | 4937738 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 69 | 2289014 | 2289055 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 70 | 2083730 | 2083771 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 71 | 5589895 | 5589936 | + | NZ_CP023691.1 | Streptomyces platensis |
| 72 | 5426489 | 5426530 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 73 | 7810254 | 7810295 | + | NZ_AP017900.1 | Nocardia seriolae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00155.23 | 1.0 | 73 | -41 | opposite-strand | Aminotransferase class I and II |
| 2 | PF02754.18 | 0.75 | 55 | 494 | opposite-strand | Cysteine-rich domain |
| 3 | PF13183.8 | 0.75 | 55 | 494 | opposite-strand | 4Fe-4S dicluster domain |
| 4 | PF13187.8 | 0.75 | 55 | 494 | opposite-strand | 4Fe-4S dicluster domain |
| 5 | PF13237.8 | 0.75 | 55 | 494 | opposite-strand | 4Fe-4S dicluster domain |
++ More..