* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012150.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02515.19
|
1.0
|
2
|
2700.0
|
opposite-strand
|
CoA-transferase family III
|
2
|
PF13561.8
|
1.0
|
2
|
1445.5
|
both-strands
|
Enoyl-(Acyl carrier protein) reductase
|
3
|
PF00106.27
|
1.0
|
2
|
1445.5
|
both-strands
|
short chain dehydrogenase
|
4
|
PF08659.12
|
1.0
|
2
|
1026
|
same-strand
|
KR domain
|
5
|
PF00440.25
|
1.0
|
2
|
-3.0
|
same-strand
|
Bacterial regulatory proteins, tetR family
|
6
|
PF00378.22
|
1.0
|
2
|
170.0
|
opposite-strand
|
Enoyl-CoA hydratase/isomerase
|
7
|
PF00441.26
|
1.0
|
2
|
2138.0
|
same-strand
|
Acyl-CoA dehydrogenase, C-terminal domain
|
8
|
PF02770.21
|
1.0
|
2
|
2542.5
|
same-strand
|
Acyl-CoA dehydrogenase, middle domain
|
9
|
PF02771.18
|
1.0
|
2
|
2542.5
|
same-strand
|
Acyl-CoA dehydrogenase, N-terminal domain
|
10
|
PF13577.8
|
1.0
|
2
|
3665.5
|
same-strand
|
SnoaL-like domain
|
++ More..