Protein Information |
Information Type | Description |
---|---|
Protein name | EXP01758 |
NCBI Accession ID | NC_017381.1 |
Organism | Helicobacter pylori 2018 |
Left | 1053868 |
Right | 1054020 |
Strand | - |
Nucleotide Sequence | TTGAGGGTTAATTATGATCGCCTGTTACAAAACGCTTCGCCTTTATTAGAACTCTCTCAAAACACCACTTTTAAAATCTATCGCAAAGCCTATCAAAAATCCTTACCTTTGTTGCGCGCTGTAAGGAGATGGGTTAAAAAAATGGGTTTGTAA |
Sequence | LRVNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRAVRRWVKKMGL |
Source of smORF | Protein-level |
Function | |
Pubmed ID | 30796087 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 50 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 651436 | 651600 | - | NC_017379.1 | Helicobacter pylori Puno135 |
2 | 1122910 | 1123074 | - | NC_017379.1 | Helicobacter pylori Puno135 |
3 | 424990 | 425133 | - | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
4 | 920536 | 920679 | + | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
5 | 1436455 | 1436595 | + | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00483.25 | 1.0 | 3 | 3795 | opposite-strand | Nucleotidyl transferase |
2 | PF00275.22 | 1.0 | 3 | 2106 | opposite-strand | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) |
3 | PF00206.22 | 1.0 | 3 | 644 | opposite-strand | Lyase |
4 | PF10415.11 | 1.0 | 3 | 644 | opposite-strand | Fumarase C C-terminus |
5 | PF03167.21 | 1.0 | 3 | 9 | opposite-strand | Uracil DNA glycosylase superfamily |
6 | PF00702.28 | 1.0 | 3 | 1312.0 | same-strand | haloacid dehalogenase-like hydrolase |
7 | PF12710.9 | 1.0 | 3 | 1312.0 | same-strand | haloacid dehalogenase-like hydrolase |
8 | PF13419.8 | 1.0 | 3 | 1312.0 | same-strand | Haloacid dehalogenase-like hydrolase |
9 | PF00210.26 | 1.0 | 3 | 1950.5 | same-strand | Ferritin-like domain |
10 | PF17827.3 | 0.67 | 2 | 2221.5 | opposite-strand | PrmC N-terminal domain |
11 | PF00208.23 | 0.67 | 2 | 762.0 | opposite-strand | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase |
12 | PF02812.20 | 0.67 | 2 | 762.0 | opposite-strand | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain |
13 | PF01578.22 | 0.67 | 2 | 2290.5 | same-strand | Cytochrome C assembly protein |
14 | PF01676.20 | 0.67 | 2 | 3085.5 | same-strand | Metalloenzyme superfamily |
15 | PF06415.15 | 0.67 | 2 | 3085.5 | same-strand | BPG-independent PGAM N-terminus (iPGM N) |
16 | PF02686.17 | 0.67 | 2 | 2790.5 | same-strand | Glu-tRNAGln amidotransferase C subunit |