Result : EXP01753
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01753 |
| NCBI Accession ID | NZ_CP009472.1 |
| Organism | Lactococcus lactis strain AI06 |
| Left | 2197487 |
| Right | 2197636 |
| Strand | - |
| Nucleotide Sequence | ATGATGCACAGTAACCATAGAAAGGAAGACACAATGAAAGTAAGACCATCAGTTAAACCAATCTGCGAATACTGTAAAGTTATTCGTCGTAACGGTCGTGTAATGGTAATTTGCCCTGCCAATCCAAAACACAAACAACGTCAGGGATAG |
| Sequence | MMHSNHRKEDTMKVRPSVKPICEYCKVIRRNGRVMVICPANPKHKQRQG |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of cl00380. Profile Description: Ribosomal protein L36. 50S ribosomal protein L36; Validated The ORF matches to the profile of CHL00029. Profile Description: ribosomal protein L36 |
| Pubmed ID | 30796087 |
| Domain | CDD:412345,CDD:176970 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 49 |
++ More..
| Conservation Analysis |
No. of Species: 226
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2213179 | 2213328 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 2 | 1818958 | 1819104 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 3 | 855275 | 855406 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 4 | 84816 | 84947 | + | NC_012924.1 | Streptococcus suis SC84 |
| 5 | 86046 | 86177 | + | NZ_AP018400.1 | Streptococcus ruminantium |
| 6 | 501427 | 501558 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 7 | 634018 | 634170 | - | NZ_CP035494.1 | Microbacterium protaetiae |
| 8 | 873383 | 873535 | - | NZ_CP035806.1 | Leucobacter triazinivorans |
| 9 | 2106880 | 2107038 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 10 | 188331 | 188474 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 11 | 481956 | 482081 | + | NC_018024.1 | Acetomicrobium mobile DSM 13181 |
| 12 | 140200 | 140346 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 13 | 2125148 | 2125270 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 14 | 2183381 | 2183533 | - | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 15 | 2986383 | 2986505 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 16 | 441978 | 442100 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 17 | 150244 | 150390 | + | NZ_CP012024.1 | Bacillus smithii |
| 18 | 882983 | 883138 | - | NZ_CP008802.1 | Actinotignum schaalii |
| 19 | 342264 | 342386 | + | NZ_CP014616.1 | Sporosarcina psychrophila |
| 20 | 6381127 | 6381267 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 21 | 1639123 | 1639272 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 22 | 473618 | 473773 | + | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 23 | 1535934 | 1536077 | - | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 24 | 192182 | 192325 | + | NZ_CP034118.1 | Staphylospora marina |
| 25 | 159325 | 159474 | + | NZ_CP024955.1 | Kyrpidia spormannii |
| 26 | 165914 | 166063 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 27 | 261859 | 261981 | + | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 28 | 677444 | 677569 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 29 | 3287721 | 3287873 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 30 | 1998753 | 1998920 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 31 | 1225455 | 1225610 | - | NZ_CP007490.1 | Rhodoluna lacicola |
| 32 | 2943241 | 2943384 | - | NC_014212.1 | Meiothermus silvanus DSM 9946 |
| 33 | 1570895 | 1571035 | - | NZ_CP009302.1 | Berryella intestinalis |
| 34 | 3480941 | 3481096 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 35 | 3765956 | 3766081 | - | NC_005125.1 | Gloeobacter violaceus PCC 7421 |
| 36 | 2019822 | 2019947 | - | NC_022600.1 | Gloeobacter kilaueensis JS1 |
| 37 | 5513581 | 5513721 | + | NZ_CP033972.1 | Gordonia insulae |
| 38 | 4134221 | 4134373 | - | NZ_CP007128.1 | Gemmatirosa kalamazoonesis |
| 39 | 2284464 | 2284613 | + | NC_011891.1 | Anaeromyxobacter dehalogenans 2CP-1 |
| 40 | 1289568 | 1289720 | + | NZ_LR134363.1 | Actinomyces slackii |
| 41 | 2393227 | 2393361 | - | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 42 | 314259 | 314414 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 43 | 576688 | 576837 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 44 | 3962753 | 3962899 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 45 | 5633277 | 5633405 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 46 | 539400 | 539552 | + | NZ_CP021081.1 | Deinococcus ficus |
| 47 | 1727898 | 1728047 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 48 | 836324 | 836485 | + | NZ_CP031115.1 | Rubrobacter indicoceani |
| 49 | 2248450 | 2248590 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 50 | 2123272 | 2123409 | - | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 51 | 680650 | 680787 | + | NZ_CP061538.1 | Rothia amarae |
| 52 | 2266779 | 2266916 | - | NC_012526.1 | Deinococcus deserti VCD115 |
| 53 | 199825 | 199962 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 54 | 630481 | 630630 | + | NZ_CP066802.1 | Actinomyces weissii |
| 55 | 5626350 | 5626490 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 56 | 903717 | 903857 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 57 | 677661 | 677786 | - | NC_019793.1 | Deinococcus peraridilitoris DSM 19664 |
| 58 | 5262918 | 5263058 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 59 | 6351406 | 6351558 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 60 | 6316648 | 6316788 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 61 | 4865985 | 4866110 | - | NZ_CP042430.1 | Baekduia soli |
| 62 | 722541 | 722678 | + | NZ_CP061539.1 | Rothia terrae |
| 63 | 5095900 | 5096040 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 64 | 4158722 | 4158862 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 65 | 2862895 | 2863038 | - | NC_005363.1 | Bdellovibrio bacteriovorus HD100 |
| 66 | 4617824 | 4617967 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 67 | 3745553 | 3745681 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 68 | 5610461 | 5610601 | + | NZ_CP022685.1 | Streptomyces formicae |
| 69 | 768337 | 768483 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 70 | 4347125 | 4347268 | + | NZ_CP022310.1 | Streptomyces calvus |
| 71 | 1169070 | 1169210 | - | NZ_CP025057.1 | Spiroplasma floricola 23-6 |
| 72 | 167613 | 167747 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 73 | 553238 | 553363 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 74 | 3950781 | 3950903 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 75 | 3425677 | 3425799 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 76 | 2833196 | 2833339 | - | NZ_CP033325.1 | Georgenia faecalis |
| 77 | 4756979 | 4757101 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 78 | 184310 | 184471 | + | NZ_CP020867.1 | Campylobacter cuniculorum DSM 23162 = LMG 24588 |
| 79 | 4180757 | 4180879 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 80 | 4871977 | 4872105 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 81 | 2459118 | 2459267 | + | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 82 | 777422 | 777544 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 83 | 633012 | 633134 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 84 | 1048385 | 1048507 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 85 | 748223 | 748345 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 86 | 5062571 | 5062693 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 87 | 1463279 | 1463401 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 88 | 1247878 | 1248000 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 89 | 4567853 | 4567975 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 90 | 697808 | 697930 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 91 | 5188895 | 5189017 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 92 | 5313580 | 5313702 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 93 | 809955 | 810077 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 94 | 5244437 | 5244559 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 95 | 5309146 | 5309268 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 96 | 5314034 | 5314156 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 97 | 5435026 | 5435148 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 98 | 519470 | 519592 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 99 | 2864155 | 2864277 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 100 | 5392220 | 5392342 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 101 | 5472967 | 5473089 | - | NZ_CP010896.1 | Pseudomonas simiae |
| 102 | 5634990 | 5635112 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 103 | 5759522 | 5759644 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 104 | 6000089 | 6000211 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 105 | 702083 | 702205 | + | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 106 | 5847461 | 5847583 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 107 | 5841639 | 5841761 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 108 | 5851138 | 5851260 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 109 | 6006014 | 6006136 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 110 | 6202644 | 6202766 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 111 | 4906817 | 4906939 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 112 | 6053621 | 6053743 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 113 | 4625461 | 4625583 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 114 | 6131544 | 6131666 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 115 | 6113119 | 6113241 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 116 | 6178853 | 6178975 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 117 | 445798 | 445920 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 118 | 6145192 | 6145314 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 119 | 3918427 | 3918573 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 120 | 4080528 | 4080674 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 121 | 4293585 | 4293731 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 122 | 4065898 | 4066044 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 123 | 1924193 | 1924324 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 124 | 5295679 | 5295819 | - | NZ_CP042912.1 | Mariniblastus fucicola |
| 125 | 2603453 | 2603587 | - | NC_015385.1 | Treponema succinifaciens DSM 2489 |
| 126 | 943227 | 943349 | - | NZ_CP042997.1 | Aquisphaera giovannonii |
| 127 | 7576419 | 7576586 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 128 | 6583216 | 6583347 | - | NZ_CP058322.1 | Micromonospora carbonacea |
| 129 | 3619000 | 3619122 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 130 | 5081646 | 5081789 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 131 | 4224432 | 4224563 | + | NZ_CP061725.1 | Micromonospora craniellae |
| 132 | 7732746 | 7732913 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 133 | 2614029 | 2614154 | + | NZ_CP046400.1 | Pseudodesulfovibrio cashew |
| 134 | 2957204 | 2957347 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 135 | 4567606 | 4567749 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 136 | 4618260 | 4618403 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 137 | 3470895 | 3471041 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 138 | 3862042 | 3862188 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 139 | 4200632 | 4200778 | - | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 140 | 3954620 | 3954766 | - | NZ_CP023691.1 | Streptomyces platensis |
| 141 | 3717566 | 3717712 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 142 | 5319759 | 5319902 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 143 | 1363232 | 1363372 | - | NZ_CP031611.1 | Campylobacter hepaticus |
| 144 | 495934 | 496065 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 145 | 2937954 | 2938094 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 146 | 617363 | 617485 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 147 | 367585 | 367710 | + | NZ_CP011797.1 | Reinekea forsetii |
| 148 | 298778 | 298915 | + | NZ_CP030032.1 | Bradymonas sediminis |
| 149 | 2145744 | 2145893 | + | NZ_CP011308.1 | Sulfurovum lithotrophicum |
| 150 | 1182285 | 1182419 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 151 | 6019986 | 6020111 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 152 | 4052037 | 4052192 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 153 | 3809633 | 3809758 | + | NC_016803.1 | Pseudodesulfovibrio mercurii |
| 154 | 378839 | 378985 | + | NZ_CP013106.1 | Halomonas huangheensis |
| 155 | 4128370 | 4128495 | + | NZ_LT907975.1 | Pseudodesulfovibrio profundus |
| 156 | 2709251 | 2709379 | + | NZ_LR593887.1 | Tuwongella immobilis |
| 157 | 1580170 | 1580298 | - | NZ_CP039268.1 | Thermochromatium tepidum ATCC 43061 |
| 158 | 1330791 | 1330916 | + | NC_012881.1 | Maridesulfovibrio salexigens DSM 2638 |
| 159 | 3633636 | 3633761 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 160 | 1169193 | 1169318 | - | NZ_CP023559.1 | Salinicola tamaricis |
| 161 | 2342223 | 2342348 | - | NC_013223.1 | Desulfohalobium retbaense DSM 5692 |
| 162 | 1467893 | 1468021 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 163 | 489871 | 489996 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 164 | 6989098 | 6989226 | + | NZ_AP021876.1 | Desulfosarcina ovata subsp. sediminis |
| 165 | 1645985 | 1646122 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 166 | 221168 | 221293 | + | NZ_CP048602.1 | Halomonas piezotolerans |
| 167 | 215599 | 215724 | + | NZ_AP022843.1 | Halomonas hydrothermalis |
| 168 | 215060 | 215185 | + | NZ_CP065135.1 | Halomonas venusta |
| 169 | 977964 | 978089 | - | NZ_CP048812.1 | Halomonas socia |
| 170 | 1973403 | 1973528 | + | NZ_CP018139.1 | Halomonas aestuarii |
| 171 | 3672959 | 3673084 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 172 | 4301990 | 4302115 | - | NZ_CP061081.1 | Marinomonas arctica |
| 173 | 1184489 | 1184644 | + | NZ_CP041070.1 | Arcobacter anaerophilus |
| 174 | 2786447 | 2786575 | - | NC_008639.1 | Chlorobium phaeobacteroides DSM 266 |
| 175 | 1768642 | 1768767 | - | NZ_CP070273.1 | Marinomonas foliarum |
| 176 | 199970 | 200098 | + | NC_007512.1 | Pelodictyon luteolum DSM 273 |
| 177 | 3837708 | 3837833 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 178 | 1008116 | 1008256 | + | NZ_CP009727.1 | Burkholderia mallei |
| 179 | 2509040 | 2509180 | + | NZ_CP035900.1 | Burkholderia glumae |
| 180 | 3490592 | 3490732 | - | NC_007651.1 | Burkholderia thailandensis E264 |
| 181 | 2034548 | 2034688 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 182 | 311923 | 312063 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 183 | 239616 | 239744 | + | NZ_CP061941.1 | Marinomonas algicola |
| 184 | 518799 | 518939 | - | NC_004545.1 | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| 185 | 1207231 | 1207356 | + | NC_020127.1 | Lawsonia intracellularis N343 |
| 186 | 3412868 | 3413023 | - | NC_015064.1 | Granulicella tundricola MP5ACTX9 |
| 187 | 4945036 | 4945158 | + | NZ_CP063458.1 | Humisphaera borealis |
| 188 | 4694864 | 4694995 | - | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 189 | 1929860 | 1930000 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 190 | 1296288 | 1296425 | - | NC_014810.2 | Helicobacter felis ATCC 49179 |
| 191 | 206800 | 206946 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 192 | 4671745 | 4671891 | - | NZ_CP046378.1 | Shewanella algae |
| 193 | 970322 | 970462 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 194 | 756608 | 756733 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 195 | 107143 | 107286 | - | NZ_CP030140.1 | Mycoplasma anseris |
| 196 | 5278166 | 5278303 | + | NZ_CP030840.1 | Acidisarcina polymorpha |
| 197 | 413555 | 413701 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 198 | 790567 | 790722 | + | NZ_CP031367.1 | Aliarcobacter trophiarum LMG 25534 |
| 199 | 800874 | 801029 | + | NZ_CP032823.1 | Aliarcobacter cryaerophilus ATCC 43158 |
| 200 | 1258482 | 1258628 | + | NZ_CP031219.1 | Malaciobacter mytili LMG 24559 |
| 201 | 1003630 | 1003764 | + | NZ_CP053837.1 | Aliarcobacter faecis |
| 202 | 1132629 | 1132763 | + | NZ_CP054051.1 | Aliarcobacter cibarius |
| 203 | 1180462 | 1180608 | + | NZ_CP032100.1 | Arcobacter suis CECT 7833 |
| 204 | 4004814 | 4004954 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 205 | 1226316 | 1226456 | + | NZ_CP053836.1 | Halarcobacter ebronensis |
| 206 | 215367 | 215492 | - | NZ_CP014230.1 | Desulfomicrobium orale DSM 12838 |
| 207 | 499654 | 499794 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 208 | 595912 | 596052 | + | NZ_LT859958.1 | Brevefilum fermentans |
| 209 | 936232 | 936363 | + | NZ_LR134378.1 | Lautropia mirabilis |
| 210 | 917010 | 917159 | - | NC_008789.1 | Halorhodospira halophila SL1 |
| 211 | 235264 | 235386 | + | NC_002971.4 | Coxiella burnetii RSA 493 |
| 212 | 3470880 | 3471032 | - | NZ_CP051461.1 | Polaromonas vacuolata |
| 213 | 265251 | 265376 | + | NZ_LT906451.1 | Legionella lansingensis |
| 214 | 3214003 | 3214152 | - | NZ_CP054012.1 | Parabacteroides distasonis |
| 215 | 437552 | 437680 | + | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 216 | 1505111 | 1505251 | + | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 217 | 334961 | 335086 | + | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 218 | 3183437 | 3183574 | + | NZ_CP022986.1 | Chryseobacterium camelliae |
| 219 | 137424 | 137555 | - | NZ_CP009654.1 | Francisella frigiditurris |
| 220 | 2612739 | 2612876 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 221 | 213640 | 213774 | + | NC_015714.1 | Treponema paraluiscuniculi Cuniculi A |
| 222 | 1982571 | 1982705 | + | NZ_LT906465.1 | Chryseobacterium taklimakanense |
| 223 | 1707356 | 1707481 | - | NZ_LR699114.1 | Aquicella lusitana |
| 224 | 6689297 | 6689434 | - | NZ_AP021861.1 | Lacipirellula parvula |
| 225 | 1562514 | 1562639 | + | NZ_CP009498.1 | Endomicrobium proavitum |
| 226 | 2329945 | 2330082 | - | NZ_AP014879.1 | Sulfuricaulis limicola |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019903.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01196.21 | 0.99 | 223 | 2611 | same-strand | Ribosomal protein L17 |
| 2 | PF03118.17 | 0.99 | 224 | 1564.5 | same-strand | Bacterial RNA polymerase, alpha chain C terminal domain |
| 3 | PF01000.28 | 1.0 | 225 | 1566 | same-strand | RNA polymerase Rpb3/RpoA insert domain |
| 4 | PF01193.26 | 1.0 | 225 | 1566 | same-strand | RNA polymerase Rpb3/Rpb11 dimerisation domain |
| 5 | PF00411.21 | 0.98 | 222 | 517.5 | same-strand | Ribosomal protein S11 |
| 6 | PF00416.24 | 0.93 | 211 | 129 | same-strand | Ribosomal protein S13/S18 |
| 7 | PF00344.22 | 0.85 | 192 | 341.5 | same-strand | SecY |
| 8 | PF00828.21 | 0.75 | 170 | 1610.5 | same-strand | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A |
| 9 | PF00163.21 | 0.73 | 166 | 926.0 | same-strand | Ribosomal protein S4/S9 N-terminal domain |
| 10 | PF01479.27 | 0.73 | 166 | 926.0 | same-strand | S4 domain |
++ More..